View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18317_low_39 (Length: 399)

Name: NF18317_low_39
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18317_low_39
NF18317_low_39
[»] chr8 (7 HSPs)
chr8 (71-380)||(15348435-15348744)
chr8 (88-199)||(12199897-12200008)
chr8 (88-199)||(12444325-12444436)
chr8 (124-215)||(4032277-4032368)
chr8 (113-203)||(12194916-12195006)
chr8 (113-203)||(12439344-12439434)
chr8 (15-64)||(15272044-15272096)
[»] chr4 (36 HSPs)
chr4 (86-380)||(48870130-48870424)
chr4 (86-380)||(48885816-48886110)
chr4 (85-248)||(7770991-7771154)
chr4 (89-248)||(48170914-48171076)
chr4 (85-239)||(48735649-48735806)
chr4 (114-239)||(48862857-48862985)
chr4 (85-214)||(45372419-45372548)
chr4 (113-241)||(7789704-7789832)
chr4 (123-248)||(7904657-7904782)
chr4 (117-248)||(33134151-33134285)
chr4 (114-241)||(45366553-45366683)
chr4 (113-231)||(48891024-48891143)
chr4 (115-217)||(48156786-48156888)
chr4 (113-239)||(7822584-7822710)
chr4 (122-248)||(7877344-7877470)
chr4 (88-236)||(48148022-48148173)
chr4 (113-248)||(7238048-7238183)
chr4 (120-248)||(7774157-7774285)
chr4 (123-243)||(49041471-49041591)
chr4 (113-239)||(7800252-7800378)
chr4 (100-241)||(50668645-50668786)
chr4 (114-248)||(33133653-33133790)
chr4 (113-247)||(7765236-7765370)
chr4 (113-235)||(7813095-7813217)
chr4 (113-247)||(7786058-7786192)
chr4 (113-215)||(7907940-7908042)
chr4 (123-248)||(37827322-37827447)
chr4 (99-239)||(48875447-48875587)
chr4 (114-233)||(45385131-45385249)
chr4 (157-239)||(48852316-48852401)
chr4 (115-183)||(48902567-48902635)
chr4 (129-216)||(49044589-49044676)
chr4 (118-209)||(48898342-48898436)
chr4 (101-215)||(50251169-50251283)
chr4 (116-236)||(47207552-47207672)
chr4 (129-179)||(49048996-49049046)
[»] chr5 (6 HSPs)
chr5 (116-239)||(29712806-29712929)
chr5 (114-229)||(29695768-29695883)
chr5 (116-248)||(29687669-29687801)
chr5 (116-179)||(42562728-42562791)
chr5 (113-214)||(1812040-1812141)
chr5 (129-178)||(178650-178699)
[»] chr1 (5 HSPs)
chr1 (117-239)||(24309796-24309918)
chr1 (114-239)||(24340030-24340155)
chr1 (122-239)||(24322086-24322203)
chr1 (113-228)||(24366770-24366885)
chr1 (117-239)||(24415456-24415577)
[»] scaffold0508 (1 HSPs)
scaffold0508 (114-235)||(11878-11999)
[»] chr3 (5 HSPs)
chr3 (113-239)||(11024874-11025000)
chr3 (113-239)||(11015862-11015988)
chr3 (113-239)||(47452247-47452370)
chr3 (113-206)||(11006332-11006425)
chr3 (146-182)||(955615-955651)
[»] chr6 (3 HSPs)
chr6 (137-231)||(21979989-21980083)
chr6 (113-221)||(21015391-21015499)
chr6 (122-182)||(14193139-14193199)
[»] chr7 (1 HSPs)
chr7 (89-220)||(48883373-48883505)


Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-162; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 71 - 380
Target Start/End: Original strand, 15348435 - 15348744
Alignment:
Q  71 actaccttacctatctcatgaattaatagttcaaattctagagaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttct 170  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  15348435 actaccttacctgtctcatgaattaatagttcaaattctagagaggttaccggtgaagtctcttatacgtttcaaatgcgtttgtaagtcttggttttct 15348534  T
Q  171 cttatctctgatccttacttcgcaaattcacattttcaaattaccgccgcaacacacactcgtagaattttgtgcataggtcatctacctcattctatag 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15348535 cttatctctgatccttacttcgcaaattcacattttcaaattaccgccgcaacacacactcgtagaattttgtgcataggtcatctacctcattctatag 15348634  T
Q  271 atttagcaacatcgcttgatgatgattctacttctgcttcactcaatgttgattttctacatccacaaaatcattctgattttgaaattgaaggttcatg 370  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  15348635 atttagcagcatcgcttgatgattattctacttctgcttcactcaatgttgattttctacatccacaaaatcattctgattttgaaattaaaggttcatg 15348734  T
Q  371 tagaggcttt 380  Q
    ||||||||||    
T  15348735 tagaggcttt 15348744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 88 - 199
Target Start/End: Original strand, 12199897 - 12200008
Alignment:
Q  88 atgaattaatagttcaaattctagagaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatcctta 187  Q
    ||||||||||  ||||||| ||   |||||| |||||||| |||||| || |||||||||| ||||||||||| |||||||||||||||||||||||| |    
T  12199897 atgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctca 12199996  T
Q  188 cttcgcaaattc 199  Q
    ||| ||||||||    
T  12199997 ctttgcaaattc 12200008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 88 - 199
Target Start/End: Original strand, 12444325 - 12444436
Alignment:
Q  88 atgaattaatagttcaaattctagagaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatcctta 187  Q
    ||||||||||  ||||||| ||   |||||| |||||||| |||||| || |||||||||| ||||||||||| |||||||||||||||||||||||| |    
T  12444325 atgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttttctcttatctctgatcctca 12444424  T
Q  188 cttcgcaaattc 199  Q
    ||| ||||||||    
T  12444425 ctttgcaaattc 12444436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 124 - 215
Target Start/End: Complemental strand, 4032368 - 4032277
Alignment:
Q  124 tgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatccttacttcgcaaattcacattttcaaattacc 215  Q
    |||| ||||||||||||||||| || |||||||| ||||||||  ||||||| ||||||||| |||| |||||||| |||||||||||||||    
T  4032368 tgaagtctcttatacgtttcaagtgtgtttgtaaatcttggttaactcttatatctgatcctcactttgcaaattcgcattttcaaattacc 4032277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 113 - 203
Target Start/End: Original strand, 12194916 - 12195006
Alignment:
Q  113 gaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatccttacttcgcaaattcacat 203  Q
    |||||| |||||||| |||||| || ||||||||||| |||||||||| ||||| |||||||||||||||||  |||| ||||||||||||    
T  12194916 gaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctgatccacactttgcaaattcacat 12195006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 113 - 203
Target Start/End: Original strand, 12439344 - 12439434
Alignment:
Q  113 gaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatccttacttcgcaaattcacat 203  Q
    |||||| |||||||| |||||| || ||||||||||| |||||||||| ||||| |||||||||||||||||  |||| ||||||||||||    
T  12439344 gaggttgccggtgaagtctcttttatgtttcaaatgcatttgtaagtcatggttatctcttatctctgatccacactttgcaaattcacat 12439434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 15272044 - 15272096
Alignment:
Q  15 atgaagaaaagaaacc---gtcgcagagggagtaagcgcactgagaagaaaaa 64  Q
    ||||||||||||||||   |||||||||||||||||||||| |||||||||||    
T  15272044 atgaagaaaagaaaccaaagtcgcagagggagtaagcgcacagagaagaaaaa 15272096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 4e-51; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 86 - 380
Target Start/End: Original strand, 48870130 - 48870424
Alignment:
Q  86 tcatgaattaatagttcaaattctagagaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatcct 185  Q
    ||||||||| ||||||||||||||   |||| |||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||     
T  48870130 tcatgaattgatagttcaaattctgctgaggctaccggtgaattctcttattcgtttcaaatgcgtttgtaagtcttggttttttcttatctccgatccc 48870229  T
Q  186 tacttcgcaaattcacattttcaaattaccgccgcaacacacactcgtagaattttgtgcataggtcatctacctcattctatagatttagcaacatcgc 285  Q
       || |||||||||||||||||  | || |||||||||||||||||||| ||| ||| |||    |  |  |||| |||||||||||||| | ||||||    
T  48870230 ctttttgcaaattcacattttcatctcacagccgcaacacacactcgtaggattctgttcatctcaccacctcctcgttctatagatttagaagcatcgc 48870329  T
Q  286 ttgatgatgattctacttctgcttcactcaatgttgattttctacatccacaaaatcattctgattttgaaattgaaggttcatgtagaggcttt 380  Q
    ||| | |||||||||  ||| ||||| ||||| |||||||||| | |||  ||  | ||| ||||||||||||| ||||||||||||||||||||    
T  48870330 ttgcttatgattctatctcttcttcagtcaatcttgattttctgcttcctgaatcttattatgattttgaaattaaaggttcatgtagaggcttt 48870424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 86 - 380
Target Start/End: Original strand, 48885816 - 48886110
Alignment:
Q  86 tcatgaattaatagttcaaattctagagaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatcct 185  Q
    ||||||||| ||||||||||||||   |||| |||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||     
T  48885816 tcatgaattgatagttcaaattctgctgaggctaccggtgaattctcttattcgtttcaaatgcgtttgtaagtcttggttttttcttatctccgatccc 48885915  T
Q  186 tacttcgcaaattcacattttcaaattaccgccgcaacacacactcgtagaattttgtgcataggtcatctacctcattctatagatttagcaacatcgc 285  Q
       || |||||||||||||||||  | || |||||||||||||||||||| ||| ||| |||    |  |  |||| |||||||||||||| | ||||||    
T  48885916 ctttttgcaaattcacattttcatctcacagccgcaacacacactcgtaggattctgttcatctcaccacctcctcgttctatagatttagaagcatcgc 48886015  T
Q  286 ttgatgatgattctacttctgcttcactcaatgttgattttctacatccacaaaatcattctgattttgaaattgaaggttcatgtagaggcttt 380  Q
    ||| | |||||||||  ||| ||||| ||||| |||||||||| | |||  ||  | ||| ||||||||||||| ||||||||||||||||||||    
T  48886016 ttgcttatgattctatctcttcttcagtcaatcttgattttctgcttcctgaatcttattatgattttgaaattaaaggttcatgtagaggcttt 48886110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 85 - 248
Target Start/End: Original strand, 7770991 - 7771154
Alignment:
Q  85 ctcatgaattaatagttcaaattctagagaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatcc 184  Q
    |||||||| ||||| | ||||||||   |||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7770991 ctcatgaactaataatccaaattctgatgaggttgccggtgaagtctcttatatgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatcc 7771090  T
Q  185 ttacttcgcaaattcacattttcaaattaccgccgcaacacacactcgtagaattttgtgcata 248  Q
    | |||| | |||||||||||||||| || || | |||||||||||| ||||| |||| ||||||    
T  7771091 tcactttgaaaattcacattttcaacttgcctctgcaacacacacttgtagatttttatgcata 7771154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 89 - 248
Target Start/End: Complemental strand, 48171076 - 48170914
Alignment:
Q  89 tgaattaatagttcaaattctagagaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctc---tgatcct 185  Q
    |||||| ||||||||||||||   ||||||| ||||||| |||||| ||||||||||||| |||||||||||||||||| ||||||||||   |||||||    
T  48171076 tgaattgatagttcaaattctgctgaggttatcggtgaagtctcttctacgtttcaaatgtgtttgtaagtcttggtttgctcttatctctcatgatcct 48170977  T
Q  186 tacttcgcaaattcacattttcaaattaccgccgcaacacacactcgtagaattttgtgcata 248  Q
     |||| |||||||| ||||||||||||||||||  |||||||||||||| |||| ||| ||||    
T  48170976 cactttgcaaattcgcattttcaaattaccgcctaaacacacactcgtaaaattatgttcata 48170914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 85 - 239
Target Start/End: Complemental strand, 48735806 - 48735649
Alignment:
Q  85 ctcatgaattaatagttcaaattctagagaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctc---tga 181  Q
    ||||||| || ||||||||||||||   ||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||   |||    
T  48735806 ctcatgagttgatagttcaaattcttctgaggttaccggtgaagtctcttattcgtttcaaatgtgtttgtaagtcttggttttctcttatctcctgtga 48735707  T
Q  182 tccttacttcgcaaattcacattttcaaattaccgccgcaacacacactcgtagaatt 239  Q
    | || | || ||||||||||||||| |||||||||||  ||| |||||||||||||||    
T  48735706 tactgattttgcaaattcacattttgaaattaccgccataacccacactcgtagaatt 48735649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 114 - 239
Target Start/End: Original strand, 48862857 - 48862985
Alignment:
Q  114 aggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctc---tgatccttacttcgcaaattcacattttcaaa 210  Q
    |||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||   ||||||| |||| ||||||||||||||||||     
T  48862857 aggttaccggtgaagtctcttattcgtttcaaatgcgtttgcaagtcttggttttctcttatctctcatgatcctcactttgcaaattcacattttcaac 48862956  T
Q  211 ttaccgccgcaacacacactcgtagaatt 239  Q
    |||| |||||||||||||| | |||||||    
T  48862957 ttactgccgcaacacacacccatagaatt 48862985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 85 - 214
Target Start/End: Complemental strand, 45372548 - 45372419
Alignment:
Q  85 ctcatgaattaatagttcaaattctagagaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatcc 184  Q
    |||||||||| ||  |||||||||||   ||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  45372548 ctcatgaattgatgattcaaattctactaaggttgccggtgaagtctcttatacgtttcaaatgtgtttgtaagtcttggttttctattatctctgatcc 45372449  T
Q  185 ttacttcgcaaattcacattttcaaattac 214  Q
    | | || |||||||||||||||||||||||    
T  45372448 tcattttgcaaattcacattttcaaattac 45372419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 113 - 241
Target Start/End: Original strand, 7789704 - 7789832
Alignment:
Q  113 gaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatccttacttcgcaaattcacattttcaaatt 212  Q
    |||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||| |||| | |||||||||||||||| ||    
T  7789704 gaggttgccggtgaagtctcttatatgtttcaaatgcgtttgtaagtcttggttttcttttatctccgatcctcactttgaaaattcacattttcaactt 7789803  T
Q  213 accgccgcaacacacactcgtagaatttt 241  Q
     || |||||||||||||| ||||| ||||    
T  7789804 gcctccgcaacacacacttgtagattttt 7789832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 123 - 248
Target Start/End: Original strand, 7904657 - 7904782
Alignment:
Q  123 gtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatccttacttcgcaaattcacattttcaaattaccgccgcaa 222  Q
    ||||| |||||||||||||||||||| ||||||||||  |||||||||||||||||||||||| |||| |||||||||||||||||| | |||||||||     
T  7904657 gtgaagtctcttatacgtttcaaatgtgtttgtaagttatggttttctcttatctctgatcctcactttgcaaattcacattttcaactcaccgccgcag 7904756  T
Q  223 cacacactcgtagaattttgtgcata 248  Q
    |  |||||| ||||||| ||||||||    
T  7904757 ctaacactcctagaattatgtgcata 7904782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 117 - 248
Target Start/End: Complemental strand, 33134285 - 33134151
Alignment:
Q  117 ttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctc---tgatccttacttcgcaaattcacattttcaaatta 213  Q
    ||||||||||| |||||||| ||||||||||||||||||||| |||| ||||||||||||||   ||||||| |||| |||||||||||||||||||| |    
T  33134285 ttaccggtgaagtctcttattcgtttcaaatgcgtttgtaagccttgattttctcttatctctaatgatcctcactttgcaaattcacattttcaaataa 33134186  T
Q  214 ccgccgcaacacacactcgtagaattttgtgcata 248  Q
    ||||| ||||||||||| ||| |||| ||| ||||    
T  33134185 ccgcctcaacacacactagtaaaattgtgttcata 33134151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 114 - 241
Target Start/End: Complemental strand, 45366683 - 45366553
Alignment:
Q  114 aggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctct---gatccttacttcgcaaattcacattttcaaa 210  Q
    |||||||| ||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||   ||| |  |||| ||||||||||||||||||     
T  45366683 aggttaccagtgaagtctcttatacgtttcaagtgcgtttgtaagtattggttttctcttatctctcgtgattcacactttgcaaattcacattttcaac 45366584  T
Q  211 ttaccgccgcaacacacactcgtagaatttt 241  Q
    || ||||||||| ||||||||||||| ||||    
T  45366583 tttccgccgcaaaacacactcgtagagtttt 45366553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 113 - 231
Target Start/End: Original strand, 48891024 - 48891143
Alignment:
Q  113 gaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatccttacttcgcaaattcacattttcaaatt 212  Q
    ||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| | || |||||||| ||||||||| ||    
T  48891024 gaggttatcggtaaagtctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttgtctcagatcctcattttgcaaattcgcattttcaactt 48891123  T
Q  213 accg-ccgcaacacacactc 231  Q
    |||| || ||||||||||||    
T  48891124 accgcccccaacacacactc 48891143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 115 - 217
Target Start/End: Complemental strand, 48156888 - 48156786
Alignment:
Q  115 ggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatccttacttcgcaaattcacattttcaaattac 214  Q
    ||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||| ||| || | || |||||||| ||||||||||||||    
T  48156888 ggttaccggtgaagtctcttctacgtttcaagtgcgtttgtaagtcttggttttctcttatctccgatactcattttgcaaattctcattttcaaattac 48156789  T
Q  215 cgc 217  Q
    |||    
T  48156788 cgc 48156786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 113 - 239
Target Start/End: Original strand, 7822584 - 7822710
Alignment:
Q  113 gaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatccttacttcgcaaattcacattttcaaatt 212  Q
    |||||| |||||||| | ||||||||||||||| || |||||||| || |||||||||||||||||||||||  |||| ||||||||||| |||||| |     
T  7822584 gaggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttatctctgatccccactttgcaaattcacaatttcaattc 7822683  T
Q  213 accgccgcaacacacactcgtagaatt 239  Q
    ||| | |||||||| ||||||||||||    
T  7822684 accactgcaacacatactcgtagaatt 7822710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 122 - 248
Target Start/End: Original strand, 7877344 - 7877470
Alignment:
Q  122 ggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatccttacttcgcaaattcacattttcaaattaccgccgca 221  Q
    |||||| ||||||||||||||||||||| ||||||||   |||||||||||||||||||||||  | || |||||||||||||||||| | ||| || ||    
T  7877344 ggtgaagtctcttatacgtttcaaatgcatttgtaagctatggttttctcttatctctgatcccaattttgcaaattcacattttcaactcaccaccaca 7877443  T
Q  222 acacacactcgtagaattttgtgcata 248  Q
    || ||||||| ||||||| ||||||||    
T  7877444 acgcacactcctagaattatgtgcata 7877470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 88 - 236
Target Start/End: Complemental strand, 48148173 - 48148022
Alignment:
Q  88 atgaattaatagttcaaattctagagaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctc---tgatcc 184  Q
    ||||||| ||||||||||| ||    |||||||| ||||| |||||||| ||||||||||| || ||||||||||||||||||||||||||   ||||||    
T  48148173 atgaattgatagttcaaatcctttcaaggttaccagtgaagtctcttattcgtttcaaatgtgtctgtaagtcttggttttctcttatctctcatgatcc 48148074  T
Q  185 ttacttcgcaaattcacattttcaaattaccgccgcaacacacactcgtaga 236  Q
    | |||||||||||||||||||| || | |||||  ||| |||||||| ||||    
T  48148073 tcacttcgcaaattcacattttgaactcaccgcttcaaaacacactcataga 48148022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 113 - 248
Target Start/End: Complemental strand, 7238183 - 7238048
Alignment:
Q  113 gaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatccttacttcgcaaattcacattttcaaatt 212  Q
    |||||| || ||||| ||||||||  |||||||||| |||||||||||||||||||||||||||||||| ||| |||| |||||||||||||| |||  |    
T  7238183 gaggttgccagtgaagtctcttatctgtttcaaatgtgtttgtaagtcttggttttctcttatctctgaccctcactttgcaaattcacatttccaacat 7238084  T
Q  213 accgccgcaacacacactcgtagaattttgtgcata 248  Q
    ||| | ||||| || ||||||||  |||| ||||||    
T  7238083 acctctgcaacgcatactcgtaggtttttatgcata 7238048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 120 - 248
Target Start/End: Complemental strand, 7774285 - 7774157
Alignment:
Q  120 ccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatccttacttcgcaaattcacattttcaaattaccgccg 219  Q
    |||||||| |||||||| | ||||||||| |||||||||   |||||||||||||||||||||||  | || |||||||||||||||||| | ||| ||     
T  7774285 ccggtgaagtctcttattcatttcaaatgtgtttgtaagctatggttttctcttatctctgatccccattttgcaaattcacattttcaactcaccacca 7774186  T
Q  220 caacacacactcgtagaattttgtgcata 248  Q
    |||| ||||||| ||||||| ||||||||    
T  7774185 caacgcacactcctagaattatgtgcata 7774157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 123 - 243
Target Start/End: Complemental strand, 49041591 - 49041471
Alignment:
Q  123 gtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatccttacttcgcaaattcacattttcaaattaccgccgcaa 222  Q
    ||||| ||||||||  |||||||||||||||| |||||||||||||||||||||||||||||  | || |||||||| |||||| || ||||| || |||    
T  49041591 gtgaagtctcttatttgtttcaaatgcgtttgcaagtcttggttttctcttatctctgatccccattttgcaaattctcatttttaacttacccccccaa 49041492  T
Q  223 cacacactcgtagaattttgt 243  Q
    | ||||  |||||||||||||    
T  49041491 cccacaaccgtagaattttgt 49041471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 113 - 239
Target Start/End: Original strand, 7800252 - 7800378
Alignment:
Q  113 gaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatccttacttcgcaaattcacattttcaaatt 212  Q
    |||||| |||||||| | ||||||||||||||| || |||||||| || |||||||||||| ||||||||||   ||| ||||||||||| |||||| |     
T  7800252 gaggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttgtctctgatccccgctttgcaaattcacaatttcaattc 7800351  T
Q  213 accgccgcaacacacactcgtagaatt 239  Q
    ||| | |||||||| ||||||||||||    
T  7800352 accactgcaacacatactcgtagaatt 7800378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 100 - 241
Target Start/End: Original strand, 50668645 - 50668786
Alignment:
Q  100 ttcaaattctagagaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatccttacttcgcaaattc 199  Q
    |||||||| | | |||||| || ||||||| ||||||||||||||| ||||||||||| |||||||||||||| ||||| ||||   | || || |||||    
T  50668645 ttcaaattttggtgaggttgcccgtgaaatatcttatacgtttcaagtgcgtttgtaaatcttggttttctctcatctccgatcacaattttgctaattc 50668744  T
Q  200 acattttcaaattaccgccgcaacacacactcgtagaatttt 241  Q
     |||||| || |||| |||| | |||||||||||||||||||    
T  50668745 tcattttgaacttactgccgaatcacacactcgtagaatttt 50668786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 114 - 248
Target Start/End: Original strand, 33133653 - 33133790
Alignment:
Q  114 aggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctc---tgatccttacttcgcaaattcacattttcaaa 210  Q
    ||||||||  |||| |||||||| |||||||||| | ||||||||  ||||||||||||||||||   ||||| | |||| |||||||| ||||||||||    
T  33133653 aggttaccaatgaagtctcttattcgtttcaaattcatttgtaagctttggttttctcttatctctaatgatcttcactttgcaaattcgcattttcaaa 33133752  T
Q  211 ttaccgccgcaacacacactcgtagaattttgtgcata 248  Q
    | |||||| ||||||||||| ||| |||| ||| ||||    
T  33133753 taaccgcctcaacacacactagtaaaattgtgttcata 33133790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 113 - 247
Target Start/End: Original strand, 7765236 - 7765370
Alignment:
Q  113 gaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatccttacttcgcaaattcacattttcaaatt 212  Q
    ||||||||||||||| |||||  ||  |||||| ||| |||||||||  ||||||||| |||||||||||||| |||| |||||||||||||| ||| ||    
T  7765236 gaggttaccggtgaagtctctcttagttttcaagtgcatttgtaagttatggttttctattatctctgatcctcactttgcaaattcacatttccaactt 7765335  T
Q  213 accgccgcaacacacactcgtagaattttgtgcat 247  Q
    | |   |||| ||||||||||||| |||| |||||    
T  7765336 aaccatgcaaaacacactcgtagatttttatgcat 7765370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 113 - 235
Target Start/End: Original strand, 7813095 - 7813217
Alignment:
Q  113 gaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatccttacttcgcaaattcacattttcaaatt 212  Q
    |||||| |||||||| | ||||||||||||||| || |||||||| || |||||||||||||||||||| ||  |||| ||||| ||||| |||||| |     
T  7813095 gaggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttttctcttatctctgaaccccactttgcaaagtcacaatttcaattc 7813194  T
Q  213 accgccgcaacacacactcgtag 235  Q
    ||| | |||||||| ||||||||    
T  7813195 accactgcaacacatactcgtag 7813217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 113 - 247
Target Start/End: Original strand, 7786058 - 7786192
Alignment:
Q  113 gaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatccttacttcgcaaattcacattttcaaatt 212  Q
    |||||| ||||||||||||||||||   ||||||||||||||||||   ||| ||||| |||||||||||||| | || |||||||||||||| ||| ||    
T  7786058 gaggttgccggtgaaatctcttatattgttcaaatgcgtttgtaagctatggatttctattatctctgatcctcaatttgcaaattcacatttccaactt 7786157  T
Q  213 accgccgcaacacacactcgtagaattttgtgcat 247  Q
    | |    ||| ||||||||||||| |||| |||||    
T  7786158 aaccttacaaaacacactcgtagatttttatgcat 7786192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 113 - 215
Target Start/End: Original strand, 7907940 - 7908042
Alignment:
Q  113 gaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatccttacttcgcaaattcacattttcaaatt 212  Q
    |||||| |||||||| ||||||| ||||||||| |  ||| ||||||| ||||||||||||||||||| |||  | || |||||||||||||||||| ||    
T  7907940 gaggttgccggtgaagtctcttacacgtttcaagtctgttcgtaagtcatggttttctcttatctctgctccccattttgcaaattcacattttcaactt 7908039  T
Q  213 acc 215  Q
    |||    
T  7908040 acc 7908042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 123 - 248
Target Start/End: Complemental strand, 37827447 - 37827322
Alignment:
Q  123 gtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatccttacttcgcaaattcacattttcaaattaccgccgcaa 222  Q
    ||||| ||||||||| |||| | ||||||||||||||| |||||  ||||||| ||| ||||  |||| |||||||||||||||||| |||| ||| ||     
T  37827447 gtgaagtctcttataagttttacatgcgtttgtaagtcatggttaactcttatatctaatcccgactttgcaaattcacattttcaacttacggccacag 37827348  T
Q  223 cacacactcgtagaattttgtgcata 248  Q
    |||| |||||| ||||| ||| ||||    
T  37827347 cacaaactcgtcgaattctgttcata 37827322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 99 - 239
Target Start/End: Original strand, 48875447 - 48875587
Alignment:
Q  99 gttcaaattctagagaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatccttacttcgcaaatt 198  Q
    |||||||||||   ||||||| | || || ||||| || ||||||||||||||||| ||||||||||||||||| ||||| || ||  | ||  ||||||    
T  48875447 gttcaaattctgctgaggttatcagtcaagtctctaattcgtttcaaatgcgtttgcaagtcttggttttctctcatctccgaaccccattttacaaatt 48875546  T
Q  199 cacattttcaaattaccgccgcaacacacactcgtagaatt 239  Q
    ||||||||||| | ||||| |||||||   |||||||||||    
T  48875547 cacattttcaactcaccgcggcaacaccgtctcgtagaatt 48875587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 114 - 233
Target Start/End: Complemental strand, 45385249 - 45385131
Alignment:
Q  114 aggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatccttacttcgcaaattcacattttcaaatta 213  Q
    |||||||| || || ||||| ||||||||||||| ||||||||||||||||||||||||  |||| ||| |  |||| ||| ||||||| |||||| ||     
T  45385249 aggttaccagttaagtctctcatacgtttcaaatccgtttgtaagtcttggttttctctcgtctccgatacccactttgcatattcaca-tttcaacttt 45385151  T
Q  214 ccgccgcaacacacactcgt 233  Q
    ||||| |||||||| |||||    
T  45385150 ccgccacaacacaccctcgt 45385131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 157 - 239
Target Start/End: Original strand, 48852316 - 48852401
Alignment:
Q  157 agtcttggttttctcttatctctga---tccttacttcgcaaattcacattttcaaattaccgccgcaacacacactcgtagaatt 239  Q
    ||||||||||||||||||||||| |   |||| |||| |||||||| |||||| ||||||| ||| ||||||||||||||||||||    
T  48852316 agtcttggttttctcttatctctcacaatcctcactttgcaaattcgcattttgaaattactgcctcaacacacactcgtagaatt 48852401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 115 - 183
Target Start/End: Original strand, 48902567 - 48902635
Alignment:
Q  115 ggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatc 183  Q
    |||| ||||| || ||||| || ||||||||||| |||||||||||||||||||||||||| |||||||    
T  48902567 ggttgccggtaaagtctctcattcgtttcaaatgtgtttgtaagtcttggttttctcttatatctgatc 48902635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 129 - 216
Target Start/End: Complemental strand, 49044676 - 49044589
Alignment:
Q  129 tctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatccttacttcgcaaattcacattttcaaattaccg 216  Q
    |||||| |||||||||| || ||||||||||  |||||||||||||||||| |  |  |||| ||||||||||||||| |||||||||    
T  49044676 tctcttttacgtttcaagtgtgtttgtaagttatggttttctcttatctctcaaacccactttgcaaattcacattttgaaattaccg 49044589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 118 - 209
Target Start/End: Original strand, 48898342 - 48898436
Alignment:
Q  118 taccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctct---gatccttacttcgcaaattcacattttcaa 209  Q
    |||| ||||| ||||||| ||||||||| || ||||||||||||||||| || |||||||||   ||| |  |||| ||||||||||||||||||    
T  48898342 tacctgtgaagtctcttacacgtttcaagtgtgtttgtaagtcttggttctcacttatctctcatgatgcccactttgcaaattcacattttcaa 48898436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 215
Target Start/End: Complemental strand, 50251283 - 50251169
Alignment:
Q  101 tcaaattctagagaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatccttacttcgcaaattca 200  Q
    ||||||| |||  ||||| || |||||  |||||||||  || || || |||| ||||||||||||||||||||||||||||||  |||  |||||||      
T  50251283 tcaaattttagttaggttgccagtgaaggctcttatacaattaaagtgggtttctaagtcttggttttctcttatctctgatccccactgtgcaaatttg 50251184  T
Q  201 cattttcaaattacc 215  Q
    ||||||||| |||||    
T  50251183 cattttcaacttacc 50251169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 236
Target Start/End: Original strand, 47207552 - 47207672
Alignment:
Q  116 gttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatccttacttcgcaaattcacattttcaaattacc 215  Q
    |||||||||||| |||||||||||||| ||  | ||||| |||||||| |||||||| ||||| || ||  | ||  | |||||||||||| || |||||    
T  47207552 gttaccggtgaagtctcttatacgttttaagagtgtttggaagtcttgattttctctcatctccgacccacatttttctaattcacattttgaacttacc 47207651  T
Q  216 gccgcaacacacactcgtaga 236  Q
     ||  ||||||||||| ||||    
T  47207652 accaaaacacacactcataga 47207672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 179
Target Start/End: Complemental strand, 49049046 - 49048996
Alignment:
Q  129 tctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctct 179  Q
    |||||| |||||||||| || ||||||||||  ||||||||||||||||||    
T  49049046 tctcttttacgtttcaagtgtgtttgtaagttatggttttctcttatctct 49048996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 7e-28; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 116 - 239
Target Start/End: Complemental strand, 29712929 - 29712806
Alignment:
Q  116 gttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatccttacttcgcaaattcacattttcaaattacc 215  Q
    |||||||||||| |||||||| |||||||| |||||||||||||  |||||||||||||||||| |  || | ||||||||||||||||||||| |||||    
T  29712929 gttaccggtgaagtctcttattcgtttcaagtgcgtttgtaagttatggttttctcttatctctcaatctgatttcgcaaattcacattttcaacttacc 29712830  T
Q  216 gccgcaacacacactcgtagaatt 239  Q
    |||  ||||||| ||| |||||||    
T  29712829 gccaaaacacacgctcctagaatt 29712806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 114 - 229
Target Start/End: Original strand, 29695768 - 29695883
Alignment:
Q  114 aggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatccttacttcgcaaattcacattttcaaatta 213  Q
    |||||||| || || |||||||| ||||||||||||||||||||||  ||||| |||||||| ||| | ||| |||| |||||||||||||||||| |||    
T  29695768 aggttaccagtcaagtctcttattcgtttcaaatgcgtttgtaagttatggttatctcttatatctcaacctcactttgcaaattcacattttcaactta 29695867  T
Q  214 ccgccgcaacacacac 229  Q
    || |||| ||||||||    
T  29695868 ccaccgctacacacac 29695883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 116 - 248
Target Start/End: Original strand, 29687669 - 29687801
Alignment:
Q  116 gttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatccttacttcgcaaattcacattttcaaattacc 215  Q
    |||||| ||||| ||||||||||| ||||| || ||||||||||||||||||||||| || ||| | ||| |||| |||||||| ||||||||| |||||    
T  29687669 gttaccagtgaagtctcttatacgcttcaagtgtgtttgtaagtcttggttttctctcatatctcaacctcactttgcaaattctcattttcaacttacc 29687768  T
Q  216 gccgcaacacacactcgtagaattttgtgcata 248  Q
    |||    ||||||||| ||||||| ||| ||||    
T  29687769 gccaatgcacacactcctagaattctgttcata 29687801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 42562791 - 42562728
Alignment:
Q  116 gttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctct 179  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  42562791 gttaccggtgaattctcttattcgtttcaaatgcgtttgtaagtcttggttttctctaatctct 42562728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 214
Target Start/End: Original strand, 1812040 - 1812141
Alignment:
Q  113 gaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatccttacttcgcaaattcacattttcaaatt 212  Q
    ||||||||| ||||| | ||| ||||||| |||||| ||||||||||  |||||||||||||||||  ||||  |||| |||||||  ||||||||| ||    
T  1812040 gaggttaccagtgaagtatctcatacgttccaaatgggtttgtaagttatggttttctcttatctcaaatccccactttgcaaattatcattttcaactt 1812139  T
Q  213 ac 214  Q
    ||    
T  1812140 ac 1812141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 129 - 178
Target Start/End: Original strand, 178650 - 178699
Alignment:
Q  129 tctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctc 178  Q
    |||||||| ||||||||||| ||||||||||||||||| ||||| |||||    
T  178650 tctcttattcgtttcaaatgtgtttgtaagtcttggttatctctcatctc 178699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 117 - 239
Target Start/End: Original strand, 24309796 - 24309918
Alignment:
Q  117 ttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatccttacttcgcaaattcacattttcaaattaccg 216  Q
    |||||||| || |||||||| |||||||||| |||||||||||  ||||||||||||||||||||| || |||| |||||||||||||||||| ||||      
T  24309796 ttaccggttaagtctcttattcgtttcaaatccgtttgtaagttatggttttctcttatctctgattctcactttgcaaattcacattttcaacttactt 24309895  T
Q  217 ccgcaacacacactcgtagaatt 239  Q
    |  |||||||||| |||||||||    
T  24309896 cttcaacacacacccgtagaatt 24309918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 114 - 239
Target Start/End: Original strand, 24340030 - 24340155
Alignment:
Q  114 aggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatccttacttcgcaaattcacattttcaaatta 213  Q
    ||||||||||| || |||||||| ||||||||||  ||||||||||| |||||||| ||||||||||||  | |||| ||||||||||| |||||| |||    
T  24340030 aggttaccggttaagtctcttattcgtttcaaatctgtttgtaagtcatggttttcacttatctctgataatcactttgcaaattcacactttcaagtta 24340129  T
Q  214 ccgccgcaacacacactcgtagaatt 239  Q
    | || ||||||||||||| |||||||    
T  24340130 ctgctgcaacacacactcttagaatt 24340155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 122 - 239
Target Start/End: Original strand, 24322086 - 24322203
Alignment:
Q  122 ggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatccttacttcgcaaattcacattttcaaattaccgccgca 221  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||  |||||   || ||||||||||| ||||  | ||| || |||    
T  24322086 ggtgaagtctcttattcgtttcaaatgcgtttgtaagtcttggttttctcttatctcaaatcctcgttttgcaaattcacagtttctgaatactgctgca 24322185  T
Q  222 acacacactcgtagaatt 239  Q
    |||||||||||| |||||    
T  24322186 acacacactcgtcgaatt 24322203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 113 - 228
Target Start/End: Original strand, 24366770 - 24366885
Alignment:
Q  113 gaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatccttacttcgcaaattcacattttcaaatt 212  Q
    ||||||||| ||  || |||| || ||||||||||| ||||| ||||| |||||||||||||||||  |||||||||| ||||||||||| ||||| |||    
T  24366770 gaggttaccagttgaaactctgattcgtttcaaatgtgtttgcaagtcatggttttctcttatctcaaatccttactttgcaaattcacagtttcagatt 24366869  T
Q  213 accgccgcaacacaca 228  Q
    || || ||||||||||    
T  24366870 actgctgcaacacaca 24366885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 117 - 239
Target Start/End: Original strand, 24415456 - 24415577
Alignment:
Q  117 ttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatccttacttcgcaaattcacattttcaaattaccg 216  Q
    |||||||| || |||||||| ||||||||||||||| |||||||||||||||||||||| ||  ||||    || ||||||||||| ||||| ||||| |    
T  24415456 ttaccggttaagtctcttattcgtttcaaatgcgttcgtaagtcttggttttctcttatttcaaatcc-agttttgcaaattcacagtttcagattactg 24415554  T
Q  217 ccgcaacacacactcgtagaatt 239  Q
    | ||||||||||||||| |||||    
T  24415555 ctgcaacacacactcgtcgaatt 24415577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 114 - 235
Target Start/End: Original strand, 11878 - 11999
Alignment:
Q  114 aggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatccttacttcgcaaattcacattttcaaatta 213  Q
    ||||||||| | || |||||||| |||||||||| |||||||||||| |||||||||||||||||||||  | |||| |||||||||||||||||| |||    
T  11878 aggttaccgattaagtctcttatccgtttcaaatccgtttgtaagtcatggttttctcttatctctgataatcactttgcaaattcacattttcaactta 11977  T
Q  214 ccgccgcaacacacactcgtag 235  Q
    |  |  ||||||||||||||||    
T  11978 cttcttcaacacacactcgtag 11999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 7e-25; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 113 - 239
Target Start/End: Complemental strand, 11025000 - 11024874
Alignment:
Q  113 gaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatccttacttcgcaaattcacattttcaaatt 212  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||| |||||  ||||||||||||||| | |||| ||||| || |||||| || ||    
T  11025000 gaggttaccggtgaagtctctcatacgtttcaaatgcgtttgtaagtcatggttagctcttatctctgatcataactttgcaaaatcgcattttgaactt 11024901  T
Q  213 accgccgcaacacacactcgtagaatt 239  Q
     || | ||||||||||||  |||||||    
T  11024900 tcccctgcaacacacactaatagaatt 11024874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 113 - 239
Target Start/End: Complemental strand, 11015988 - 11015862
Alignment:
Q  113 gaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatccttacttcgcaaattcacattttcaaatt 212  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||| | |||  ||||||||||||||| | |||| ||||| || |||||| || ||    
T  11015988 gaggttaccggtgaagtctctcatacgtttcaaatgcgtttgtaagtcattgttagctcttatctctgatcataactttgcaaaatcgcattttgaactt 11015889  T
Q  213 accgccgcaacacacactcgtagaatt 239  Q
     || | ||||||||||||  |||||||    
T  11015888 tccactgcaacacacactaatagaatt 11015862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 113 - 239
Target Start/End: Complemental strand, 47452370 - 47452247
Alignment:
Q  113 gaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatccttacttcgcaaattcacattttcaaatt 212  Q
    |||||| |||||||| |||||| |||| ||||| ||| ||| |||||| ||||||||||||||||||||||||  ||| |||||  |||||||| || ||    
T  47452370 gaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttttctcttatctctgatcctctctttgcaaaaacacattttgaactt 47452271  T
Q  213 accgccgcaacacacactcgtagaatt 239  Q
    |||||||   |||||||||||||||||    
T  47452270 accgccg---cacacactcgtagaatt 47452247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 113 - 206
Target Start/End: Complemental strand, 11006425 - 11006332
Alignment:
Q  113 gaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatccttacttcgcaaattcacatttt 206  Q
    |||||| |||||||| || |||||||||||||| || ||||||||||| |||||  ||||||||||||||||| |||| ||||| || ||||||    
T  11006425 gaggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggttaactcttatctctgatcctcactttgcaaaatcgcatttt 11006332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 182
Target Start/End: Original strand, 955615 - 955651
Alignment:
Q  146 atgcgtttgtaagtcttggttttctcttatctctgat 182  Q
    |||||||||||||||||||  ||||||||||||||||    
T  955615 atgcgtttgtaagtcttggaattctcttatctctgat 955651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 137 - 231
Target Start/End: Complemental strand, 21980083 - 21979989
Alignment:
Q  137 acgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatccttacttcgcaaattcacattttcaaattaccgccgcaacacacactc 231  Q
    ||||||||| || ||||||||||||||||||||||| |||||| ||||  |||| || |||||||||||| |  || ||||||||||||||||||    
T  21980083 acgtttcaagtgtgtttgtaagtcttggttttctctcatctctcatcccaactttgcgaattcacattttgatcttgccgccgcaacacacactc 21979989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 113 - 221
Target Start/End: Original strand, 21015391 - 21015499
Alignment:
Q  113 gaggttaccggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgatccttacttcgcaaattcacattttcaaatt 212  Q
    |||||||||||| |  |||||| |||||||||| || ||||||||||  | |||||||||||||||| |  |  |||| |||| |||||||||| |||||    
T  21015391 gaggttaccggtcatgtctcttctacgtttcaagtgtgtttgtaagttattgttttctcttatctctcaaacccactttgcaatttcacattttgaaatt 21015490  T
Q  213 accgccgca 221  Q
    || ||||||    
T  21015491 actgccgca 21015499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 182
Target Start/End: Complemental strand, 14193199 - 14193139
Alignment:
Q  122 ggtgaaatctcttatacgtttcaaatgcgtttgtaagtcttggttttctcttatctctgat 182  Q
    |||||| |||||  || |||||||||| |||||||||| |||| |||||||||||| ||||    
T  14193199 ggtgaagtctctcttaggtttcaaatgtgtttgtaagttttggctttctcttatctttgat 14193139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 89 - 220
Target Start/End: Original strand, 48883373 - 48883505
Alignment:
Q  89 tgaattaatagttcaaattctagagaggttaccggtgaaatctcttatacgtttcaaa---tgcgtttgtaagtcttggttttctcttatctctgatcct 185  Q
    |||||||||  |||||||| | | ||||||||  ||||| |||||| |||||||||||   || ||||||||| |||||||||||||  ||||| || |     
T  48883373 tgaattaatcattcaaattttggtgaggttacatgtgaagtctcttttacgtttcaaaaaatgtgtttgtaagccttggttttctct--tctctcatacc 48883470  T
Q  186 tacttcgcaaattcacattttcaaattaccgccgc 220  Q
     |||||||||| || ||||||||| |||| |||||    
T  48883471 aacttcgcaaaatcccattttcaacttacagccgc 48883505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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