View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18317_low_4 (Length: 705)

Name: NF18317_low_4
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18317_low_4
NF18317_low_4
[»] chr4 (4 HSPs)
chr4 (10-529)||(53037341-53037860)
chr4 (20-529)||(39995742-39996251)
chr4 (591-688)||(53037182-53037279)
chr4 (614-683)||(39996336-39996405)


Alignment Details
Target: chr4 (Bit Score: 512; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 10 - 529
Target Start/End: Complemental strand, 53037860 - 53037341
Alignment:
Q  10 catcatcataactaggaagaagcaaagaatctccatctgaatcatgtgttcctggccccatataaacttctttcccccatccaaaatcaagtccataaat 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53037860 catcatcataactaggaagaagcaaagaatctccatctgaatcatgtgttcctggccccatataaacttctttcccccatccaaaatcaagtccataaat 53037761  T
Q  110 tggcaatgtcaaccaactaaccactcctaaatttggatttccataaaatggccctttatcatcactccccatcttagcatgaagatcttgaaacttagtc 209  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53037760 tggcaatgtcaaccaactaaccactcctaaatttggattcccataaaatggccctttatcatcactccccatcttagcatgaagatcttgaaacttagtc 53037661  T
Q  210 aaatcctcttgcttcttaaaatactcaattcccattctcacatactcatcattcactttctcaatcgcttcccttatcctacttgaagcataccctaaag 309  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53037660 aaatcctcttgcttcttaaaatactcgattcccattctcacatactcatcattcactttctcaatcgcttcccttatcctacttgaagcataccctaaag 53037561  T
Q  310 gcttagatattaaatcccctgcaagactagtagccacaacatccaaagtcccattcccaaaatacccttttggtaaattaggctccacacgattcctcca 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53037560 gcttagatattaaatcccctgcaagactagtagccacaacatccaaagtcccattcccaaaatacccttttggtaaattaggctccacacgattcctcca 53037461  T
Q  410 atcaacacaaacaccaagcgaagtttgttggtcatttgcatgccctctagctttacttgcacttctccaaacatgaccggttaaggtttcatatctcgta 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53037460 atcaacacaaacaccaagcgaagtttgttggtcatttgcatgccctctagctttacttgcacttctccaaacatgaccggttaaggtttcatatctcgta 53037361  T
Q  510 taacctcgaccattgctagg 529  Q
    ||||||||||||||||||||    
T  53037360 taacctcgaccattgctagg 53037341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 20 - 529
Target Start/End: Original strand, 39995742 - 39996251
Alignment:
Q  20 actaggaagaagcaaagaatctccatc---tgaatcatgtgttcctggccccatataaacttctttcccccatccaaaatcaagtccataaattggcaat 116  Q
    ||||||||||||||| |||||||||||   |   |||||||||||| ||||||||||||| || || ||||| |||||||||||||||||||||||||||    
T  39995742 actaggaagaagcaatgaatctccatcaagttcttcatgtgttcctagccccatataaacctcctttccccacccaaaatcaagtccataaattggcaat 39995841  T
Q  117 gtcaaccaactaaccactcctaaatttggatttccataaaatggccctttatcatcactccccatcttagcatgaagatcttgaaacttagtcaaatcct 216  Q
    | ||||||||||  |||||||||||| ||||| | |||||| ||||| || ||| || |||| |    | | ||||||||||| |||||||||||||| |    
T  39995842 gacaaccaactagtcactcctaaattaggattccaataaaaaggccccttctcaccattccctac---aacttgaagatcttggaacttagtcaaatctt 39995938  T
Q  217 cttgcttcttaaaatactcaattcccattctcacatactcatcattcactttctcaatcgcttcccttatcctacttgaagcataccctaaaggcttaga 316  Q
    ||||||||||||| |||||| | ||||  || | ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| || |||||    
T  39995939 cttgcttcttaaagtactcattccccaacctaatatactcatcgttcactttctcaaccgcttcccttatcctacttgaagcataccctaagggtttaga 39996038  T
Q  317 tattaaatcccctgcaagactagtagccacaacatccaaagtcccattcccaaaatacccttttggtaaattaggctccacacgattcctccaatcaaca 416  Q
     |||||||| ||||| ||||||||||||| |||||| ||| |  ||||||||||||||||||| ||||||||||| |||||||||  |||||||||||||    
T  39996039 cattaaatcacctgctagactagtagccaaaacatctaaaatggcattcccaaaataccctttaggtaaattaggttccacacgacgcctccaatcaaca 39996138  T
Q  417 caaacaccaagcgaagtttgttggtcatttgcatgccctctagctttacttgcacttctccaaacatgaccggttaaggtttcatatctcgtataacctc 516  Q
    |||||||||||||  ||| |||||||||||  |||| |||| ||||||| |||||||||||||| |||||||||||  |||||||| |||| ||||||||    
T  39996139 caaacaccaagcgcggttggttggtcatttttatgctctcttgctttacatgcacttctccaaatatgaccggttactgtttcatacctcgaataacctc 39996238  T
Q  517 gaccattgctagg 529  Q
    ||||||| |||||    
T  39996239 gaccattactagg 39996251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 591 - 688
Target Start/End: Complemental strand, 53037279 - 53037182
Alignment:
Q  591 agcatagccaccgttgnnnnnnncttcctttcttcaacattattcgaatttcctaacaataacggaggttcattaaactcccattcattaacattaac 688  Q
    ||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53037279 agcatagccaccgttgtttttttcttcctttcttcaacattattcgaatttcctaacaataacggaggttcattaaactcccattcattaacattaac 53037182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 614 - 683
Target Start/End: Original strand, 39996336 - 39996405
Alignment:
Q  614 cttcctttcttcaacattattcgaatttcctaacaataacggaggttcattaaactcccattcattaaca 683  Q
    |||||||||||||||||||| | |||||||||||||||| ||| ||| || |  |||||||| |||||||    
T  39996336 cttcctttcttcaacattatccaaatttcctaacaataaaggaagttgatcaggctcccatttattaaca 39996405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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