View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18317_low_41 (Length: 382)
Name: NF18317_low_41
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 16 - 370
Target Start/End: Original strand, 42768554 - 42768908
Alignment:
| Q |
16 |
atggtggtaagatttccaatacttcctaaacttgttcgtagtatttggcctaaacaacaatgccaaagtctgcaaagctccgaggcaaaacaccgctatt |
115 |
Q |
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| T |
42768554 |
atggtggtaagatttccaatacttcctaaacttgttcgtagtatttggcctaaacaacaatgccaaagtctgcaaagctccgaggcaaaacaccgctatt |
42768653 |
T |
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| Q |
116 |
ccgagcttcctgtggagtccgtactcaactcctggcgtcattttcccgagttgaataccaataccaaacccaacggttccaagaataaaaccaaacattt |
215 |
Q |
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| T |
42768654 |
ccgagcttcctgtggagtccgtactcaactcctggcgtcattttcccgagttgaataccaataccaaacccaacggttccaagaataaaaccaaacattt |
42768753 |
T |
|
| Q |
216 |
gtattcctgcatgagcatagaaccatgaagggcctaatgtctgaaagtgtcgaagataacgtgctgttatcgctcctgttggtaaaagtataccccaaga |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42768754 |
gtattcctgcatgagcatagaaccatgaagggcctaatgtctgaaagtgtcgaagataacgtgctgttatcgctcctgttggtaaaagtataccccaaga |
42768853 |
T |
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| Q |
316 |
tattgcatttaggacaccatgaatcactcttaacattgtgaggtcagtgtgttga |
370 |
Q |
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| T |
42768854 |
tattgcatttaggacgccatgaatcactcttaacattgtgaggtcagtgtgttga |
42768908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 17 - 370
Target Start/End: Complemental strand, 2452967 - 2452614
Alignment:
| Q |
17 |
tggtggtaagatttccaatacttcctaaacttgttcgtagtatttggcctaaacaacaatgccaaagtctgcaaagctccgaggcaaaacaccgctattc |
116 |
Q |
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|||||||| ||||||||||||||||| ||||||||| ||| ||||||||||||||||| || ||||||||||| ||||| ||||||||||| || | || |
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| T |
2452967 |
tggtggtaggatttccaatacttcctgaacttgttcctagcgtttggcctaaacaacaacgctaaagtctgcaaggctccaaggcaaaacacggcgactc |
2452868 |
T |
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| Q |
117 |
cgagcttcctgtggagtccgtactcaactcctggcgtcattttcccgagttgaataccaataccaaacccaacggttccaagaataaaaccaaacatttg |
216 |
Q |
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| |||||||||||||| | ||||| |||||||| | || | ||| || ||||| ||||| | ||||| || ||||||||||| ||| |||||| ||| |
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| T |
2452867 |
caagcttcctgtggaggctatactccactcctggagacaactgcccaaggtgaatgccaattgcgaaccccacagttccaagaatgaaagcaaacaattg |
2452768 |
T |
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| Q |
217 |
tattcctgcatgagcatagaaccatgaagggcctaatgtctgaaagtgtcgaagataacgtgctgttatcgctcctgttggtaaaagtataccccaagat |
316 |
Q |
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|||||||||||||||||||||||||| ||| |||| || |||| || | || |||||||| ||||| ||||| | || ||||| |||||||| || |
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| T |
2452767 |
tattcctgcatgagcatagaaccatgcaggacctagtgattgaatatgcctaaagtaacgtgcagttatagctcccatcggcaaaagaataccccatgag |
2452668 |
T |
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| Q |
317 |
attgcatttaggacaccatgaatcactcttaacattgtgaggtcagtgtgttga |
370 |
Q |
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|| ||||| | ||| ||||||||||| | |||||| ||||| ||||||||| |
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| T |
2452667 |
atggcattcaaagtaccgtgaatcactctcagcattgtaaggtctgtgtgttga |
2452614 |
T |
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