View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18317_low_42 (Length: 382)
Name: NF18317_low_42
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 2814370 - 2814005
Alignment:
| Q |
1 |
tgctttccgaagcatgtgctcggttggctaacacgaaaggtnnnnnnnnnnnnnggaaagctagggagaaacagcttgaggaagcgaggaggcttgcttc |
100 |
Q |
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| T |
2814370 |
tgctttccgaagcatgtgctcggttggctaacacgaaaggtaaaaaagcaaaaaggaaagctagggagaaacagcttgaggaagcggggaggcttgcttc |
2814271 |
T |
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| Q |
101 |
tttacagaaaaagagagaattgaaggctgctgggattgatataaggcagcggaggaggaaaaggagagggattgattataatgcagaaattccgtttgag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2814270 |
tttacagaaaaagagagaattgaaggctgctgggattgatataaggcagcggaggaggaaaaggagagggattgattataatgcagaaattccgtttgag |
2814171 |
T |
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| Q |
201 |
aagaggcctcctccgggttattttgatgtaggtgatgaggatagggaggtggagcagcgtttccctactactatagaagaacttgaggggaaaagaagga |
300 |
Q |
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||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2814170 |
aagaggcctcctccgggttattttgatgttgctgatgaggatagggaggtggagcagcgtttccctactactatagaagaacttgaggggaaaagaagga |
2814071 |
T |
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| Q |
301 |
ttgatgttgaggctcagttgagaaagcaagacgttgcaaggaataaaatcgcagagaggcaagatg |
366 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2814070 |
ttgatgttgaggctcagttgagaaagcaagatgttgcaaggaataaaatcgcagagaggcaagatg |
2814005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 47752441 - 47752809
Alignment:
| Q |
1 |
tgctttccgaagcatgtgctcggttggctaacacgaaaggtnnnnnnnnnnnnnggaaagctagggagaaacagcttgaggaagcgaggaggcttgcttc |
100 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
47752441 |
tgctttccgaagcacgtgctcggttggctaacacgaaaggtaaaaaagcaaaaaggaaagctagggagaaacagcttgaggaagcaaggaggctcgcttc |
47752540 |
T |
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| Q |
101 |
tttacagaaaaagagagaattgaaggctgctgggattgatataaggcagcggaggaggaaaaggagagggattgattataatgcagaaattccgtttgag |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47752541 |
tttacagaaaaagagagaactgaaggctgctgggattgatataaggcagcggaggaggaaaaggagagggattgattataatgcagaaattccgtttgag |
47752640 |
T |
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| Q |
201 |
aagaggcctcctccgggttattttgatgtaggtgatgaggatagggaggtggagcagcgt---ttccctactactatagaagaacttgaggggaaaagaa |
297 |
Q |
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||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||| |
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| T |
47752641 |
aagaggcctcctccgggttattttgatgttgctgatgaggatagggaggtggagcagcctgcattccctactactattgaagaacttgaggggaaaagaa |
47752740 |
T |
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| Q |
298 |
ggattgatgttgaggctcagttgagaaagcaagacgttgcaaggaataaaatcgcagagaggcaagatg |
366 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
47752741 |
ggattgatgttgaggcacagttgagaaagcaagacgttgcaaggaataaaattgcagagaggcaagatg |
47752809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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