View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18317_low_43 (Length: 381)
Name: NF18317_low_43
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 15 - 375
Target Start/End: Complemental strand, 42974589 - 42974229
Alignment:
| Q |
15 |
ctaatctccatgcaaacccaccacaatccattctccacacatcacaaggtaacgtaaacaaatttctctccctaccacacgcaaactgcacaaccctaac |
114 |
Q |
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| T |
42974589 |
ctaatctccatgcaaacccaccacaatccattctccacacatcacaaggtaacgtaaacaaatttctctcccttccacacgcaaactgcacaaccctaac |
42974490 |
T |
|
| Q |
115 |
cctacacgtgaacgacggatacaaaaccacaccatttattttcatcaccaacgctataactccatcacccatcatctccctgtaagcaccgtttgtccac |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42974489 |
cctacacgtgaacgacggatacaaaaccacaccatttattttcatcaccaacgctataactccatcacccatcatctccctgtaagcaccgtttgtccac |
42974390 |
T |
|
| Q |
215 |
gtcactctcccgtaaccgtccgatataaatcctggacacgtgtccaccatcagctttgcacttctctcttcatctgtattccctagtccctcaccctcta |
314 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42974389 |
gtcactctcccgtaaccgtccgatataaaccctggacacgtgtccaccatcagctttgcacttctctcttcatctgtattccctagtccctcaccctcta |
42974290 |
T |
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| Q |
315 |
cccatgcgtccgttacgcactctacagttaaccgcaccgtcaccggctccaccgtgctgta |
375 |
Q |
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| T |
42974289 |
cccatgcgtccgttacgcactctacagttaaccgcaccgtcaccggctccaccgtgctgta |
42974229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 259
Target Start/End: Complemental strand, 34059256 - 34059207
Alignment:
| Q |
210 |
tccacgtcactctcccgtaaccgtccgatataaatcctggacacgtgtcc |
259 |
Q |
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| T |
34059256 |
tccacgtcactctcccataaccgtccgatataaatccaggacacgcgtcc |
34059207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 34059430 - 34059385
Alignment:
| Q |
15 |
ctaatctccatgcaaacccaccacaatccattctccacacatcaca |
60 |
Q |
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| T |
34059430 |
ctaatctccatgcaaaaccaccacagtccaatctccacgcatcaca |
34059385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 8059511 - 8059463
Alignment:
| Q |
15 |
ctaatctccatgcaaacccaccacaatccattctccacacatcacaagg |
63 |
Q |
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|||| |||||||||||||||||||| || | |||||| ||||||||||| |
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| T |
8059511 |
ctaacctccatgcaaacccaccacactctaatctccaaacatcacaagg |
8059463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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