View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18317_low_44 (Length: 376)
Name: NF18317_low_44
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 5e-72; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 200 - 362
Target Start/End: Complemental strand, 14797644 - 14797474
Alignment:
| Q |
200 |
ctcaccagaacatagctctgatgccataataaattatggaatgattctgtttatttcacatagcagaatgactaatatatacacagtcccacttcactgt |
299 |
Q |
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| T |
14797644 |
ctcaccagaacatagctctgatgccataataaattatggaatgattctgtttatttcacatagcagaatgactaatatatacacagtcccacttcactgt |
14797545 |
T |
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| Q |
300 |
catatcagagtctttaaacaattgtctaat--------ttaaactatgcctacattaagatggtcaaaggt |
362 |
Q |
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| T |
14797544 |
catatcagagtctttaaacaattatctaatttatctccttaaactatgcctacattaagatggtcaaaggt |
14797474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 200 - 362
Target Start/End: Complemental strand, 14806518 - 14806348
Alignment:
| Q |
200 |
ctcaccagaacatagctctgatgccataataaattatggaatgattctgtttatttcacatagcagaatgactaatatatacacagtcccacttcactgt |
299 |
Q |
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| T |
14806518 |
ctcaccagaacatagctctgatgccataataaattatggaatgattctgtttatttcacatagcagaatgactaatatatacacagtcccacttcactgt |
14806419 |
T |
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| Q |
300 |
catatcagagtctttaaacaattgtctaat--------ttaaactatgcctacattaagatggtcaaaggt |
362 |
Q |
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| T |
14806418 |
catatcagagtctttaaacaattatctaatttatctccttaaactatgcctacattaagatggtcaaaggt |
14806348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 13 - 164
Target Start/End: Complemental strand, 14797831 - 14797680
Alignment:
| Q |
13 |
aaaataagtcaagatctgctactgtacatcatgcacgtaaagagatcctcgtagcttttggccattcatcataattttcaccccgaagttggacttgggt |
112 |
Q |
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| T |
14797831 |
aaaataagtcaagatccgctactgtacgtcatgcacgtaaagaggtcctcgtagcctttgcccattcatcataattttcaccccgaagttggacttgggt |
14797732 |
T |
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| Q |
113 |
gattatgcttcctgggttgtcattcgaattcatatcatacggagatggcgtc |
164 |
Q |
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| T |
14797731 |
gattatgcttcctgggttgtcattcgaattcatatcatacggagatagcgtc |
14797680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 13 - 164
Target Start/End: Complemental strand, 14806705 - 14806554
Alignment:
| Q |
13 |
aaaataagtcaagatctgctactgtacatcatgcacgtaaagagatcctcgtagcttttggccattcatcataattttcaccccgaagttggacttgggt |
112 |
Q |
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| T |
14806705 |
aaaataagtcaagatccgctactgtacgtcatgcacgtaaagaggtcctcgtagcctttgcccattcatcataattttcaccccgaagttggacttgggt |
14806606 |
T |
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| Q |
113 |
gattatgcttcctgggttgtcattcgaattcatatcatacggagatggcgtc |
164 |
Q |
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| T |
14806605 |
gattatgcttcctgggttgtcattcgaattcatatcatacggagatagcgtc |
14806554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 157
Target Start/End: Complemental strand, 6379943 - 6379860
Alignment:
| Q |
74 |
ccattcatcataattttcaccccgaagttggacttgggtgattatgcttcctgggttgtcattcgaattcatatcatacggaga |
157 |
Q |
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| T |
6379943 |
ccattcatcgtagttttcaccacgtaattggacttgggtgataacgcttcctggattgtcgtgcgaactcagatcatacggaga |
6379860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 157
Target Start/End: Original strand, 1621810 - 1621893
Alignment:
| Q |
74 |
ccattcatcataattttcaccccgaagttggacttgggtgattatgcttcctgggttgtcattcgaattcatatcatacggaga |
157 |
Q |
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| T |
1621810 |
ccattcatcgtagttttcaccacgtaattggacttgggtgataacgcttcctggattgtcgtgcgaactcagatcatacggaga |
1621893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 332
Target Start/End: Original strand, 18115231 - 18115297
Alignment:
| Q |
266 |
aatgactaatatatacacagtcccacttcactgtcatatcagagtctttaaacaattgtctaattta |
332 |
Q |
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| T |
18115231 |
aatggctaatatattcacaataccacttcactgtcatatcagagtcttcaaccaattacctaattta |
18115297 |
T |
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