View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18317_low_45 (Length: 374)
Name: NF18317_low_45
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_low_45 |
 | |
|
| [»] scaffold0759 (2 HSPs) |
| | |
|
| [»] scaffold0416 (1 HSPs) |
| | |
|
| [»] scaffold0112 (4 HSPs) |
| | |
|
| [»] scaffold0093 (1 HSPs) |
| | |
|
| [»] scaffold0233 (2 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 18 - 346
Target Start/End: Original strand, 26729380 - 26729708
Alignment:
| Q |
18 |
tataattagaatctatacttttaatcaatgaaaaattattatactacatgctcaatttaataccaaacttccctaaatatatatgttatatgcatggatg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
26729380 |
tataattagaatctatacttttaatcaatgaaaaattaatatactacatgctcaatttaataccaaactttcctaaatatatgctttatatgcatggatg |
26729479 |
T |
|
| Q |
118 |
tgtatttggttccaactttaacttcctttgccatttgcagtaatcgtccagacgaagaacgttgaagcaggggaatgtccatccatcggtaggggttgta |
217 |
Q |
| |
|
||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
26729480 |
tgtatttggttccaattttaatttcctttgtcatttgcagtaatcgtccagacgaagaacgttgaagctggggaatgtccatccgtcggtaggggttgta |
26729579 |
T |
|
| Q |
218 |
cacaattattgttgaatccatgcggcaacatcttagagtgtatttatgtctctcgttggatttatggtggaagtatatgccagtcactctgaaaatattt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26729580 |
cacaattattgttgaatccatgcggcaacatcttagagtgtatttgtgtctctcgttggatttatggtggaagtatatgccagtcactctgaaaatattt |
26729679 |
T |
|
| Q |
318 |
tcggacactaatgaaaaagactacttgaa |
346 |
Q |
| |
|
|||||||||| |||||||||||||||||| |
|
|
| T |
26729680 |
tcggacactattgaaaaagactacttgaa |
26729708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 48 - 270
Target Start/End: Original strand, 26834603 - 26834824
Alignment:
| Q |
48 |
aaaaattattatactacatgctcaatttaataccaaacttccctaaatatatatgttatatgcatggatgtgtatttggttccaactttaacttcctttg |
147 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||| ||||||||||||||||| ||||| |
|
|
| T |
26834603 |
aaaaattagtatactacatgctcaatttaataccaaactttcctaaatatatacgttatatgcatagatgtgtatt-ggttccaactttaactttctttg |
26834701 |
T |
|
| Q |
148 |
ccatttgcagtaatcgtccagacgaagaacgttgaagcaggggaatgtccatccatcggtaggggttgtacacaattattgttgaatccatgcggcaaca |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| | ||||||| | |||||||| |||| |||||| || |||| |||||||| ||| |
|
|
| T |
26834702 |
ccatttgcagtaatcgtccagacgaagaacgttgaagaagggcagtgtccattcgccggtagggtttgttcacaatatgagtcgaatgcatgcggcgaca |
26834801 |
T |
|
| Q |
248 |
tcttagagtgtatttatgtctct |
270 |
Q |
| |
|
| ||||||||||| ||||||| |
|
|
| T |
26834802 |
gcgaagagtgtatttgtgtctct |
26834824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 38 - 201
Target Start/End: Complemental strand, 26777913 - 26777751
Alignment:
| Q |
38 |
ttaatcaatgaaaaattattatactacatgctcaatttaataccaaacttccctaaatatatatgttatatgcatggatgtgtatttggttccaacttta |
137 |
Q |
| |
|
||||| |||||||||||| |||||||||| ||||||||||||||||||| |||||||||||| ||||||||||| |||||||||| |||| |||||||| |
|
|
| T |
26777913 |
ttaattaatgaaaaattagtatactacattctcaatttaataccaaactctcctaaatatatacgttatatgcatagatgtgtatt-ggtttcaacttta |
26777815 |
T |
|
| Q |
138 |
acttcctttgccatttgcagtaatcgtccagacgaagaacgttgaagcaggggaatgtccatcc |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
26777814 |
acttcctttgccatttgcagtaatcgtccagacgaagaacgtagaagcagggaaatgtccatcc |
26777751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 38 - 186
Target Start/End: Original strand, 26791993 - 26792146
Alignment:
| Q |
38 |
ttaatcaatgaaaaattattatactacatgctcaatttaataccaaacttccctaaatatatatgttatatgcatggatgtgtat-ttggttccaacttt |
136 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||| ||| | |||||||||||||| |
|
|
| T |
26791993 |
ttaattaatgaaaaattagtatactacatgctcaatttaataccaaactttcctaaatatatacgttatatgcatagatatgtgtattggttccaacttt |
26792092 |
T |
|
| Q |
137 |
aacttcctttgccatttgcagtaatcgtc----cagacgaagaacgttgaagca |
186 |
Q |
| |
|
|| ||||||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
26792093 |
aatttcctttgccatttgcagtaatcatccagacagacgaagaacgttgaagca |
26792146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 26745555 - 26745629
Alignment:
| Q |
13 |
aatattataattagaatctatacttttaatcaatgaaaaattattatactacatgctcaatttaataccaaactt |
87 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
26745555 |
aatattataattaggatctatactcttaatcaatgaaaaattattatactacatgctcaatttaatgccaaactt |
26745629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 134 - 307
Target Start/End: Original strand, 26745629 - 26745802
Alignment:
| Q |
134 |
tttaacttcctttgccatttgcagtaatcgtccagacgaagaacgttgaagcaggggaatgtccatccatcggtaggggttgtacacaattattgttgaa |
233 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||| ||||| ||||||| | ||| |
|
|
| T |
26745629 |
tttaacttcctttgccctttgcagtaatcgtccagacgaagaacgttcaagcagggcaatgtccatctgccggtaggagttgttatcaattatcgccgaa |
26745728 |
T |
|
| Q |
234 |
tccatgcggcaacatcttagagtgtatttatgtctctcgttggatttatggtggaagtatatgccagtcactct |
307 |
Q |
| |
|
| |||||||| ||||| ||||||||||| | |||| ||| |||||| |||| |||||||| || |||||| |
|
|
| T |
26745729 |
tgcatgcggcgacatcgaagagtgtatttgtcactctgagtggctttatgatggaggtatatgcaagacactct |
26745802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 305 - 346
Target Start/End: Original strand, 26792352 - 26792393
Alignment:
| Q |
305 |
tctgaaaatattttcggacactaatgaaaaagactacttgaa |
346 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
26792352 |
tctgaaaatattttcggacactattgaaaaagactacttgaa |
26792393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0759 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: scaffold0759
Description:
Target: scaffold0759; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 38 - 186
Target Start/End: Original strand, 2182 - 2329
Alignment:
| Q |
38 |
ttaatcaatgaaaaattattatactacatgctcaatttaataccaaacttccctaaatatatatgttatatgcatggatgtgtatttggttccaacttta |
137 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||||||||||||| | |||||||||||| ||||||||||| |||||||| | ||||||||||||| |
|
|
| T |
2182 |
ttaattaatgaaaaattagtatactacatgctcaatttaataccaaacattcctaaatatatacgttatatgcatagatgtgta-tcggttccaacttta |
2280 |
T |
|
| Q |
138 |
acttcctttgccatttgcagtaatcgtccagacgaagaacgttgaagca |
186 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
2281 |
acttcctttgccatttgtagtaatcatccagacgaagaacgttgaagca |
2329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0759; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 305 - 346
Target Start/End: Original strand, 2519 - 2560
Alignment:
| Q |
305 |
tctgaaaatattttcggacactaatgaaaaagactacttgaa |
346 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
2519 |
tctgaaaatattttcggacactattgaaaaagactacttgaa |
2560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0416 (Bit Score: 99; Significance: 9e-49; HSPs: 1)
Name: scaffold0416
Description:
Target: scaffold0416; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 38 - 195
Target Start/End: Complemental strand, 7631 - 7473
Alignment:
| Q |
38 |
ttaatcaatgaaaaattattatactacatgctcaatttaataccaaacttccctaaatatatatgttatatgcatggatgtgtat-ttggttccaacttt |
136 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||||||||||||| | |||||||||||| ||||||||||| ||| ||| | |||||||||||||| |
|
|
| T |
7631 |
ttaattaatgaaaaattagtatactacatgctcaatttaataccaaacattcctaaatatatacgttatatgcatagatatgtgtattggttccaacttt |
7532 |
T |
|
| Q |
137 |
aacttcctttgccatttgcagtaatcgtccagacgaagaacgttgaagcaggggaatgt |
195 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||| |||||||||||||||||| ||||| |
|
|
| T |
7531 |
aacttcctttaccatttgcagtaattgtccagattaagaacgttgaagcagggcaatgt |
7473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0112 (Bit Score: 98; Significance: 3e-48; HSPs: 4)
Name: scaffold0112
Description:
Target: scaffold0112; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 50 - 195
Target Start/End: Complemental strand, 41243 - 41099
Alignment:
| Q |
50 |
aaattattatactacatgctcaatttaataccaaacttccctaaatatatatgttatatgcatggatgtgtatttggttccaactttaacttcctttgcc |
149 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||| |||||| |||||||||||||||||||| |
|
|
| T |
41243 |
aaattaatatactacatgctcaatttaataccaaactttcctaaatatatacgttatatgcatagatgtgta-ttggtttcaactttaacttcctttgcc |
41145 |
T |
|
| Q |
150 |
atttgcagtaatcgtccagacgaagaacgttgaagcaggggaatgt |
195 |
Q |
| |
|
|||||||||||| || |||| |||||||||||||||||| ||||| |
|
|
| T |
41144 |
atttgcagtaattgttcagattaagaacgttgaagcagggcaatgt |
41099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0112; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 44 - 186
Target Start/End: Complemental strand, 26103 - 25962
Alignment:
| Q |
44 |
aatgaaaaattattatactacatgctcaatttaataccaaacttccctaaatatatatgttatatgcatggatgtgtatttggttccaactttaacttcc |
143 |
Q |
| |
|
||||||||||| | || |||||||| ||||||||||||||| | ||||||||| || ||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
26103 |
aatgaaaaattggtttagtacatgcttaatttaataccaaacattcctaaatatgtacgttatatgcatagatgtgtatt-ggttccaactttaacttcc |
26005 |
T |
|
| Q |
144 |
tttgccatttgcagtaatcgtccagacgaagaacgttgaagca |
186 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
26004 |
tttgccatttgcagtaatcatccagacgaagaacgttgaagca |
25962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0112; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 17411 - 17337
Alignment:
| Q |
13 |
aatattataattagaatctatacttttaatcaatgaaaaattattatactacatgctcaatttaataccaaactt |
87 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
17411 |
aatattataattaggatctatactcttaatcaatgaaaaattattatacaacatgctcaatttaatgccaaactt |
17337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0112; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 134 - 209
Target Start/End: Complemental strand, 17337 - 17259
Alignment:
| Q |
134 |
tttaacttcctttgccatttgcagtaatcgtccagacgaagaacgttgaagca---ggggaatgtccatccatcggtag |
209 |
Q |
| |
|
|||||||||||||||| |||||||||||| | ||||||||||||||||||||| ||| ||||||||||| ||||||| |
|
|
| T |
17337 |
tttaacttcctttgccctttgcagtaatcattcagacgaagaacgttgaagcagctgggcaatgtccatccgtcggtag |
17259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093 (Bit Score: 94; Significance: 8e-46; HSPs: 1)
Name: scaffold0093
Description:
Target: scaffold0093; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 45 - 186
Target Start/End: Original strand, 20949 - 21089
Alignment:
| Q |
45 |
atgaaaaattattatactacatgctcaatttaataccaaacttccctaaatatatatgttatatgcatggatgtgtatttggttccaactttaacttcct |
144 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||| |||| ||||||||||||||||||| || |
|
|
| T |
20949 |
atgaaaaattagtatactacatgctcaatttaataccaaactttcctaaatatatacgttatatgcatagatatgta-ttggttccaactttaactttct |
21047 |
T |
|
| Q |
145 |
ttgccatttgcagtaatcgtccagacgaagaacgttgaagca |
186 |
Q |
| |
|
|||| |||||||||||||||| |||||| |||| |||||||| |
|
|
| T |
21048 |
ttgcaatttgcagtaatcgtcgagacgatgaacattgaagca |
21089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0233 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: scaffold0233
Description:
Target: scaffold0233; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 38 - 147
Target Start/End: Original strand, 17583 - 17691
Alignment:
| Q |
38 |
ttaatcaatgaaaaattattatactacatgctcaatttaataccaaacttccctaaatatatatgttatatgcatggatgtgtatttggttccaacttta |
137 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||| ||| ||||||||||| |
|
|
| T |
17583 |
ttaattaatgaaaaattagtatactacatgctcaatttaataccaaactttcctaaatatatacgttatatgcatagatgtgta-ttgattccaacttta |
17681 |
T |
|
| Q |
138 |
acttcctttg |
147 |
Q |
| |
|
|||||||||| |
|
|
| T |
17682 |
acttcctttg |
17691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0233; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 179 - 343
Target Start/End: Original strand, 17694 - 17855
Alignment:
| Q |
179 |
ttgaagcaggggaatgtccatccatcggtaggggttgtacacaattattgttgaatccatgcggcaacatcttagagtgtatttatgtctctcgttggat |
278 |
Q |
| |
|
|||||||| |||||||||||||| |||||| | |||| || |||| || |||| |||||||||||||| |||||| ||||| | || ||| |||||| |
|
|
| T |
17694 |
ttgaagcaagggaatgtccatccttcggtactgtttgttcaatattaaggtcgaattcatgcggcaacatcatagagtatatttgtatccctcattggat |
17793 |
T |
|
| Q |
279 |
ttatggtggaagtatatgccagtcactctgaaaatattttcggacactaatgaaaaagactactt |
343 |
Q |
| |
|
| |||| || ||| ||| ||| | ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
17794 |
tcatggagg---tatttgcaagtaaatctgaaaatattttcggacactattgaaaaagactactt |
17855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 95 - 186
Target Start/End: Complemental strand, 13042176 - 13042086
Alignment:
| Q |
95 |
tatatatgttatatgcatggatgtgtatttggttccaactttaacttcctttgccatttgcagtaatcgtccagacgaagaacgttgaagca |
186 |
Q |
| |
|
|||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
13042176 |
tatataggttatatgcatagatgtgtatt-ggttccaactttaacttcctttgccatttgcagtaatcgtccagatgaagaacgttgaagca |
13042086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 95 - 186
Target Start/End: Complemental strand, 13050253 - 13050163
Alignment:
| Q |
95 |
tatatatgttatatgcatggatgtgtatttggttccaactttaacttcctttgccatttgcagtaatcgtccagacgaagaacgttgaagca |
186 |
Q |
| |
|
|||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
13050253 |
tatataggttatatgcatagatgtgtatt-ggttccaactttaacttcctttgccatttgcagtaatcgtccagatgaagaacgttgaagca |
13050163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 13042217 - 13042174
Alignment:
| Q |
13 |
aatattataattagaatctatacttttaatcaatgaaaaattat |
56 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
13042217 |
aatatcataattagaatctatactttcaatcaatgaaaaattat |
13042174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 13050294 - 13050251
Alignment:
| Q |
13 |
aatattataattagaatctatacttttaatcaatgaaaaattat |
56 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
13050294 |
aatatcataattagaatctatactttcaatcaatgaaaaattat |
13050251 |
T |
|
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