View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18317_low_48 (Length: 371)
Name: NF18317_low_48
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_low_48 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 7 - 371
Target Start/End: Complemental strand, 1616598 - 1616235
Alignment:
| Q |
7 |
aagaatattatttgacaaaaatgttgacaaacgcttgttttacgttactcatattagnnnnnnnngagaggtacttatacttaatttgttgtattttata |
106 |
Q |
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| T |
1616598 |
aagaatattatttgacaaaaatgttgacaaacgcttgttttacgttactcatattagttttttt-gagaggtacttatactta-----ttgtattttata |
1616505 |
T |
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| Q |
107 |
agtattttgaggccaaatcttaaaaat--atgtattaagttccctnnnnnnnnnnnt---tatgcatcaagtaaagtttggtgcattaattcttatcaat |
201 |
Q |
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| T |
1616504 |
agtattttgaggccaaatcttaaaaatttatgtattaagttccctaaaaaataaaataattatgcatcaagtaaagtttggtgcattaattcttatcaat |
1616405 |
T |
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| Q |
202 |
caaatcccttgtataaggggagatttctaaaattcggcacttctttctttttctgaaaaggaattttttaattaagcattaagtaattcaataaaaacgt |
301 |
Q |
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| T |
1616404 |
caaatcccttgtataaggggagatttctaaaattcggcacttctttctttttctgaaaaggaattttttaattaagcattaagtaattcaataaaaacgt |
1616305 |
T |
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| Q |
302 |
atcattcatcataaataatcaaatcaacgagtcctttagggactttccgataaataaattcataaatact |
371 |
Q |
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| T |
1616304 |
atcattcatcataaataatcaaatcaatgagtcctttagggactttccgataaataaattcataaatact |
1616235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 267 - 369
Target Start/End: Original strand, 40050596 - 40050698
Alignment:
| Q |
267 |
ttttaattaagcattaagtaattcaataaaaacgtatcattcatcataaataatcaaatcaacgagtcctttagggactttccgataaataaattcataa |
366 |
Q |
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| T |
40050596 |
ttttaattaagcattaattaattcaataaaaacgtatcattcttcataaataatcaaatcaatgaatcctttaacgacttttcgataaataaattcataa |
40050695 |
T |
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| Q |
367 |
ata |
369 |
Q |
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| T |
40050696 |
ata |
40050698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 170 - 270
Target Start/End: Original strand, 40050472 - 40050572
Alignment:
| Q |
170 |
aagtaaagtttggtgcattaattcttatcaatcaaatcccttgtataaggggagatttctaaaattcggcacttctttctttttctgaaaaggaattttt |
269 |
Q |
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| T |
40050472 |
aagtaaattttgatgcattgattcttctcaatcaaatcccttgtataacgggagatttctaaaattcggtttttatttctttttctgaaaaggaattttt |
40050571 |
T |
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| Q |
270 |
t |
270 |
Q |
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| T |
40050572 |
t |
40050572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 40050421 - 40050475
Alignment:
| Q |
92 |
ttgttgtattttataagtattttgaggccaaatcttaaaaa--tatgtattaagt |
144 |
Q |
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| T |
40050421 |
ttgttgtattttataagtattttgagaccaaatcttaaaaatctatgtattaagt |
40050475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 40050335 - 40050392
Alignment:
| Q |
7 |
aagaatattatttgacaaaaatgttgacaaacgcttg---ttttacgttactcatatt |
61 |
Q |
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|||||| |||||||||||||||||||||||| ||||| |||||||||| ||||||| |
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| T |
40050335 |
aagaattttatttgacaaaaatgttgacaaaggcttgtacttttacgttattcatatt |
40050392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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