View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18317_low_49 (Length: 369)
Name: NF18317_low_49
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_low_49 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 16902662 - 16902384
Alignment:
| Q |
1 |
cagtcatccaatatggtgatgtgataggatgcatgtgtacaacttttttacactaacactgcataccaattaagctctttctataatttagaaaagatat |
100 |
Q |
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| T |
16902662 |
cagttatccaatatggtgatgtgataggatgcatgtgtacaacttttttacactaacactgcataccatttaagctctttctaaaatttagaaaagatat |
16902563 |
T |
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| Q |
101 |
agttaaaacaccaagatattttcaatttttcattgtta---ag----nnnnnnntgaatgtaaagattatgactttgtaattgtgagtgaaaataagatt |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
16902562 |
agttaaaacaccaagatattttcaatttttcattgttatctagaagaaaaaaaatgaatctaaagattatgactttgtaattgtgagtgaaaataagatt |
16902463 |
T |
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| Q |
194 |
aatgagttggatccaaattgaaatattttctctatcgaacaagttctcaaggctttttgttttatgaaatggtttcacg |
272 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16902462 |
aatgagttggatccaaattgaaatattttctctatcgaacaagttctcaaggctttttgttttatgaaatggtttcacg |
16902384 |
T |
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