View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18317_low_52 (Length: 340)
Name: NF18317_low_52
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_low_52 |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 12 - 327
Target Start/End: Complemental strand, 9822399 - 9822085
Alignment:
| Q |
12 |
agcacagacaccaggcccgacactgacatgttaaaatttgaaaaaatgaattaatcgaatgtatcacatatgtccatgtcctgccagttccatctgaagt |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9822399 |
agcacagacaccaggcccgacactgacatgttaaaatttgaaaaaatgaattaatcgaatgtatcacatatgtccatgtcctgccagttccatctgaagt |
9822300 |
T |
|
| Q |
112 |
gtcggtgttatagtgatttatattcaacattcaggcaatggttctaaattgcaatcagcaacagcaatattaaaagttttagatatctactcaacagcat |
211 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
9822299 |
gtcggtgttacagtgatttatattcaacattcaggcaatggttctaaattgcaatcagcaacagcaatattaaaagttttagatatctactcaatagcat |
9822200 |
T |
|
| Q |
212 |
tgcagcttcggtctcatcggccacaatttgccacaatatcatgattcaaggagtaaccatgaccgcaatatcatgattcacagagtaaccgtgatcgcaa |
311 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
9822199 |
tgcagcttcggtctcatcggccacaatttgccacaatatcatgattcaaggagtaaccatgaccgcaatatcatgattcacagagtaa-agtgatcgcaa |
9822101 |
T |
|
| Q |
312 |
tttagacccatgactt |
327 |
Q |
| |
|
|||||||||||||||| |
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| T |
9822100 |
tttagacccatgactt |
9822085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 12 - 327
Target Start/End: Original strand, 6275091 - 6275400
Alignment:
| Q |
12 |
agcacagacaccaggcccgacactgacatgttaaaatttgaaaaaatgaattaatcgaatgtatcacatatgtccatgtcctgccagttccatctgaagt |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
6275091 |
agcacagacaccaggcccgacactgacatgttaaaatttgaaaaaatgaattaatcgaatgtatcac------ccatgtcctgccagttccatctgaagt |
6275184 |
T |
|
| Q |
112 |
gtcggtgttatagtgatttatattcaacattcaggcaatggttctaaattgcaatcagcaacagcaatattaaaagttttagatatctactcaacagcat |
211 |
Q |
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|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6275185 |
gtcggtgttacagtgatttatattcaacattcaggcaatggttctaaattgcaatcagcaacagcaatattaaaagttttagatatctactcaacagcat |
6275284 |
T |
|
| Q |
212 |
tgcagcttcggtctcatcggccacaatttgccacaatatcatgattcaaggagtaaccatgaccgcaatatcatgattcacagagtaaccgtgatcgcaa |
311 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6275285 |
tgcagcttcggtctcatcggccacaatttgccacaatatcatgattcaaggagtaaccatgaccgcaatatcatgattcacagagtaaccgtgatcgcaa |
6275384 |
T |
|
| Q |
312 |
tttagacccatgactt |
327 |
Q |
| |
|
|||||||||||||||| |
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| T |
6275385 |
tttagacccatgactt |
6275400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 41 - 158
Target Start/End: Complemental strand, 9823007 - 9822890
Alignment:
| Q |
41 |
gttaaaatttgaaaaaatgaattaatcgaatgtatcacatatgtccatgtcctgccagttccatctgaagtgtcggtgttatagtgatttatattcaaca |
140 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||||||| | ||||||||| ||||||| |||||||||||| || | || ||| ||||||| | |
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| T |
9823007 |
gttaaaacttgaaaaaatgaattaattgaatgtatcacatatggctgtgtcctgccggttccattagaagtgtcggtgctacaatggtttctattcaata |
9822908 |
T |
|
| Q |
141 |
ttcaggcaatggttctaa |
158 |
Q |
| |
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|||| |||||| |||||| |
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| T |
9822907 |
ttcaagcaatgattctaa |
9822890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 41 - 158
Target Start/End: Original strand, 6273846 - 6273963
Alignment:
| Q |
41 |
gttaaaatttgaaaaaatgaattaatcgaatgtatcacatatgtccatgtcctgccagttccatctgaagtgtcggtgttatagtgatttatattcaaca |
140 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||||||| ||||||||| ||||||| |||||||||||| || | || ||| ||||||| | |
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| T |
6273846 |
gttaaaacttgaaaaaatgaattaattgaatgtatcacatatggttgtgtcctgccggttccattagaagtgtcggtgctaaaatggtttctattcaata |
6273945 |
T |
|
| Q |
141 |
ttcaggcaatggttctaa |
158 |
Q |
| |
|
|||| || ||| |||||| |
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|
| T |
6273946 |
ttcaagcgatgattctaa |
6273963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 41 - 158
Target Start/End: Original strand, 6274488 - 6274605
Alignment:
| Q |
41 |
gttaaaatttgaaaaaatgaattaatcgaatgtatcacatatgtccatgtcctgccagttccatctgaagtgtcggtgttatagtgatttatattcaaca |
140 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||| |||||| ||||||||| ||||||| |||||||||||| |||| || ||| ||||||| | |
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| T |
6274488 |
gttaaaacttgaaaaaatgaattaattgaatgtatcgcatatggttgtgtcctgccggttccattagaagtgtcggtgctataatggtttctattcaata |
6274587 |
T |
|
| Q |
141 |
ttcaggcaatggttctaa |
158 |
Q |
| |
|
|||| || ||| |||||| |
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| T |
6274588 |
ttcaagcgatgattctaa |
6274605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 108 - 280
Target Start/End: Complemental strand, 35679287 - 35679113
Alignment:
| Q |
108 |
aagtgtcggtgttatagtgatttatattcaaca---ttcaggcaatggttctaaattgcaatcagcaacagcaatattaaaagttttagatatctactca |
204 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||| |||| || |||||||||||||||||||| |||||||||||| ||| ||||||||||||||||| |
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| T |
35679287 |
aagtgtcggtgctatagtgatttctattcaacaacattcaagctatggttctaaattgcaatcaacaacagcaatat-aaattttttagatatctactca |
35679189 |
T |
|
| Q |
205 |
acagcattgcagcttcggtctcatcggccacaatttgccacaatatcatgattcaaggagtaaccatgaccgcaat |
280 |
Q |
| |
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|| |||||| | || | |||||||| ||||||||||||| |||||||||||||||| | |||||| |||||||||| |
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|
| T |
35679188 |
acggcattgtaactacagtctcatctgccacaatttgccgcaatatcatgattcaaagggtaaccgtgaccgcaat |
35679113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 274 - 322
Target Start/End: Complemental strand, 35679151 - 35679103
Alignment:
| Q |
274 |
ccgcaatatcatgattcacagagtaaccgtgatcgcaatttagacccat |
322 |
Q |
| |
|
|||||||||||||||||| || |||||||||| |||||||||||||||| |
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| T |
35679151 |
ccgcaatatcatgattcaaagggtaaccgtgaccgcaatttagacccat |
35679103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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