View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18317_low_53 (Length: 339)
Name: NF18317_low_53
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_low_53 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 7e-80; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 160 - 322
Target Start/End: Complemental strand, 25897371 - 25897209
Alignment:
| Q |
160 |
ctaagctctttttattctaatacattcacacacaccctgcaaggtccgggtggggcagccactttgagcttgcacctaaactccaagaacttagcagtag |
259 |
Q |
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| T |
25897371 |
ctaagttctttttattctaatacattcacacacaccctgcaaggtctgggtggggcagccactttgagcttgtacctaaactccaagaacttagcagtag |
25897272 |
T |
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| Q |
260 |
ccaatggcttggtgaaaatgtttctgagttgaaccaggaatatgaacaacatcaaggaccttg |
322 |
Q |
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| T |
25897271 |
ccaatggcttggtgaaaatgtttctgagttgaaccaggaatatgaacaacatcaaggaccttg |
25897209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 15 - 164
Target Start/End: Complemental strand, 25898282 - 25898133
Alignment:
| Q |
15 |
ttatactagtgcttatttgtaacagactgtgccagctggcatcagctaagcatgagctgtactaacagctgtcactaaaagaaaagagagagagatataa |
114 |
Q |
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| T |
25898282 |
ttatactagtgcttatttgtaacagactgtgccagttagcatcagctaagcatgagctgtactaacagctgtcactaaaagaaaagagaaagagatataa |
25898183 |
T |
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| Q |
115 |
gagtgacactgaattcctgactcagtgagcttaagtttgaactaactaag |
164 |
Q |
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| T |
25898182 |
gagtgacactgtattcctgactcagtgagcttaagtttgaactaactaag |
25898133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 83 - 191
Target Start/End: Complemental strand, 25892574 - 25892477
Alignment:
| Q |
83 |
ctgtcactaaaagaaaagagagagagatataagagtgacactgaattcctgactcagtgagcttaagtttgaactaactaagctctttttattctaatac |
182 |
Q |
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| T |
25892574 |
ctgtcactaaaagaaaagagaaagatatatatgagtgacact-----------tcagtaagcttaagtttgaactaactgagttctatttattctaatac |
25892486 |
T |
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