View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18317_low_56 (Length: 331)
Name: NF18317_low_56
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_low_56 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 331
Target Start/End: Complemental strand, 54101725 - 54101396
Alignment:
| Q |
18 |
ctattgactatttttatgacatcctgattcctgccaaaactagaagggaaaaactttgaaaagtggcgaatttagatgaatgtgatatttgcttccaaga |
117 |
Q |
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| T |
54101725 |
ctattgacaatttttatgacatcctgattcctgccaaaactagaagggaaaaactttcaaaagtggcgaatttagatgaatgtgatatttgcttccaaga |
54101626 |
T |
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| Q |
118 |
agtgttgaaagtggtaaaaagaatgggtttcaagagcttggaggaaactccactgatgctcgtggaacaacctatcacaggaacaagaa----------g |
207 |
Q |
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| T |
54101625 |
agtgttgaaagtggtaaaaagaacgggtttcaagagcttggaggaaactccactgatgctcgtggaacaacctatcacaggaacaagaagaaacaagaag |
54101526 |
T |
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| Q |
208 |
aaaggttgtaaa--cctgtattcgatcttggtcaatgtgttgatgaaacca----atttcaagaagatcgcagcagctgcaaagcgtgggatatcttgga |
301 |
Q |
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|||||||||||| || ||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
54101525 |
aaaggttgtaaaactctctattctatcttggtcaatgtgttgatgaaaccagtttctttcgagaagatcgcagcagctgcaaagcgtgggatatcttgga |
54101426 |
T |
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| Q |
302 |
gaattgcgatgttagaggtgtcaaacacaa |
331 |
Q |
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||||||||||||||||||||||||| |||| |
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| T |
54101425 |
gaattgcgatgttagaggtgtcaaatacaa |
54101396 |
T |
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