View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18317_low_58 (Length: 323)
Name: NF18317_low_58
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_low_58 |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 14645653 - 14645345
Alignment:
| Q |
1 |
cactgatgtcacaagaattcatcccaggcctaacaaattcaggagagcaatgaggcaatgaaacatagagcgcactcaaaagtaagcacaaatggagaga |
100 |
Q |
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| T |
14645653 |
cactgatgtcacaagaattcatcccaggcctaacaaattcaggagagcaatgaggcaatgaaacatagagtgcactcaaaagtaagcacaaatggagaga |
14645554 |
T |
|
| Q |
101 |
atggaaggnnnnnnnntggtaactggtatatcattcaagatagtccttaactattgttgataatacaacatcatactaactggacatccagctaggaagc |
200 |
Q |
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| T |
14645553 |
atggaaggaaaaaaaatggtaactggtatatcattcaagatagtccttaactattgttgataatacaacatcatactaactggacatctagctaggaagc |
14645454 |
T |
|
| Q |
201 |
accgacacaaacaagaacatcggacacgaaactgacgccgacaacagtcatattttcaggcaagaaattatttgaatgtaaccatgtgtgacaatgccgt |
300 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14645453 |
accgacacaaacaagaacatcggacacgacactgacgccgacaacagtcatattttcaggcaagaaattatttgaatgtaaccatgtgtgacaatgccgt |
14645354 |
T |
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| Q |
301 |
gtcagtgtt |
309 |
Q |
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||||||||| |
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| T |
14645353 |
gtcagtgtt |
14645345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 14661878 - 14661583
Alignment:
| Q |
1 |
cactgatgtcacaagaattcatcccaggcctaacaaattcaggagagcaatgaggcaatgaaacatagagcgcactcaaaagtaagcacaaatggagaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
14661878 |
cactgatgtcacaagaattcatcccaggcctaacaaattcaggagagcaatgaggcaatgaaacatagagtgcactcaaaagtaagcacaaatggagaga |
14661779 |
T |
|
| Q |
101 |
atggaaggnnnnnnnntggtaactggtatatcattcaagatagtccttaactattgttgataatacaacatcatactaactggacatccagctaggaagc |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
14661778 |
atggaaggaaaaaaaatggtaactggtatatcattcaagatagtccttaactattgttgataatacaacatcatactaactggacatctagctaggaagc |
14661679 |
T |
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| Q |
201 |
accgacacaaacaagaacatcggacacgaaactgacgccgacaacagtcatattttcaggcaagaaattatttgaatgtaaccatgtgtgacaatg |
296 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14661678 |
accgacacaaacaagaacatcggacacgacactgacgccgacaacagtcatattttcaggcaagaaattatttgaatgtaaccatgtgtgacaatg |
14661583 |
T |
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