View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18317_low_59 (Length: 321)

Name: NF18317_low_59
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18317_low_59
NF18317_low_59
[»] chr7 (1 HSPs)
chr7 (19-311)||(48486587-48486879)


Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 19 - 311
Target Start/End: Complemental strand, 48486879 - 48486587
Alignment:
Q  19 tggttgttgttctgcctgcaagaatatttggcttgtattcgctcatattaagaataatcttgttcagattccaggggcagacccgattgtacaagaccaa 118  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48486879 tggttgttgttctgcctgcaagaatatttggcttgtactcgctcatattaagaataatcttgttcagattccaggggcagacccgattgtacaagaccaa 48486780  T
Q  119 aggaagtgactttcacgaggcaatggaggaggcaatgttggcagataatggcattctggatccacattatagagctaagcaaattgtggagggtgcgact 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48486779 aggaagtgactttcacgaggcaatggaggaggcaatgttggcagataatggcattctggatccacattatagagctaagcaaattgtggagggtgcgact 48486680  T
Q  219 tcctgtgctgaacaggaatatcactgccaaggccaggtgattttaatttttccacttcgtgttgtgtatgatcatgattcatgactgatgatg 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48486679 tcctgtgctgaacaggaatatcactgccaaggccaggtgattttaatttttccacttcgtgttgtgtatgatcatgattcatgactgatgatg 48486587  T

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