View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18317_low_6 (Length: 680)
Name: NF18317_low_6
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_low_6 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 56 - 671
Target Start/End: Complemental strand, 5810750 - 5810147
Alignment:
| Q |
56 |
acgttcaaacaatgaagagtaaggaataatgttgcatcatggacaacgttaaattggattgtcatgtgttgtcattttatggtttacatgttgtaggaac |
155 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5810750 |
acgttcaaacaatgaagagtaaggaataatgttgcatcatggacaacgttaaattggattgtcatgtgttgtcattttatggtttacatgttgtaggaaa |
5810651 |
T |
|
| Q |
156 |
aatgtttccaaggaccaaggaacaaaaactctcaaacaacgaagagaagaagagaggaaagtagccgaagctagtggagataccagagcatgaaatagcc |
255 |
Q |
| |
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| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
5810650 |
attgtttccaagga-------acaaaaactctcaaacaacgaagagaagaagaaaggaaagtagccgaagctagtggagataccagagcatggaatagcc |
5810558 |
T |
|
| Q |
256 |
tgttcatgcgctctgataccgtatgtttctttatggttaatgaatggaaagctatgattctattatttcatccttttttagtagccaatgttgaaataat |
355 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
5810557 |
tgttcatgcgccctgatacagtatgtttctttatggttaatgaattgaaagctatgattctattatttcatccttttttagtagccaatgttgcaataat |
5810458 |
T |
|
| Q |
356 |
atattgaagttctgaataatgtttattttgtctataatttctgtagaaaatcacaacttgttgtttgttttcaacttttcacannnnnnnnnnatatttt |
455 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
5810457 |
atattgaagttctgaataatgtttattttgtctataatttctgtagaaaatcacaacttgttgtttgttttcaacttttcaca--ttttttttatatttt |
5810360 |
T |
|
| Q |
456 |
atgtgttgctttaggtgcttttaatttgttggaaaatgaaagacttactggacaacataaaactacttccatgtttgatttgaagaataatggttgtcta |
555 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
5810359 |
atgtgttgctctaggtgcttttaattttttggaaaatgaaagacttactggacaacataaaactacttccatgtttgatttgaag---attggttgtcta |
5810263 |
T |
|
| Q |
556 |
acaaaatgaaacatccaattttcttacttacaccctttgccaactttatactttgttttggaattttacttattttccctctagttgtttatatctcctc |
655 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
5810262 |
acaaaatgaaacatccaattttcttacttacaccctttgccaactttgtactttgttttggaattttacttattttccctctcgttgtttatatctcctc |
5810163 |
T |
|
| Q |
656 |
ttgcttttcaaatatt |
671 |
Q |
| |
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|||||||| ||||||| |
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| T |
5810162 |
ttgctttttaaatatt |
5810147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 152; Significance: 4e-80; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 37740914 - 37740501
Alignment:
| Q |
1 |
cggacaattcaatcttccaggggagattattacatgttatgccagctataccaagacgttcaaacaatgaagagtaaggaataatgttgcatcatggaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||| |||| ||| |
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|
| T |
37740914 |
cggacaattcaatcttccaggggagattattgcatgttatgccagctataccaagacattcaaacaatgaagagtaaggcataatattgcttcatcaaca |
37740815 |
T |
|
| Q |
101 |
acgttaaa--------ttggattgtcatgtgttgtcattttatggtttacatgttgtaggaacaatgtttccaaggaccaaggaacaaaaactctcaaac |
192 |
Q |
| |
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| |||||| ||| ||| |||||| ||||||||||||||||||||||||||||||| |||| ||||||| | ||||||||||||| |
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| T |
37740814 |
atgttaaattgtatatttgcattatcatgtattgtcattttatggtttacatgttgtaggaa---------caagaaccaaggctctaaaactctcaaac |
37740724 |
T |
|
| Q |
193 |
aacgaagagaagaagagaggaaagtagccgaagctagtggagataccagagcatgaaatagcctgttcatgcgctctgataccgtatgtttctttatggt |
292 |
Q |
| |
|
|||||||||||||||| ||||||| ||| ||||||| ||||||||||||||||| ||||| |||||||||||| ||||||| ||||||||| ||| | | |
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|
| T |
37740723 |
aacgaagagaagaagaaaggaaagcagctgaagctaaaggagataccagagcatggaatagtctgttcatgcgccctgatacagtatgtttccttacgat |
37740624 |
T |
|
| Q |
293 |
taatgaatggaaagctatgattctattatttcatccttttttagtagccaatgttgaaataatatattgaagttctgaataatgtttattttgtct--at |
390 |
Q |
| |
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| ||| |||| |||||||||||||||||||||||||| ||| |||||| || |||| | ||| | ||| ||||||||| ||||||| ||| || |
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|
| T |
37740623 |
ga---aattgaaatttatgattctattatttcatcctttttgagttgccaatttttcaatagttcattcatgttttgaataatgcttattttatcttcat |
37740527 |
T |
|
| Q |
391 |
aatttctgtagaaaatcacaacttgt |
416 |
Q |
| |
|
| ||||| |||||| ||||||||||| |
|
|
| T |
37740526 |
attttctatagaaagtcacaacttgt |
37740501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 37757125 - 37756712
Alignment:
| Q |
1 |
cggacaattcaatcttccaggggagattattacatgttatgccagctataccaagacgttcaaacaatgaagagtaaggaataatgttgcatcatggaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |||||||||||| || |||||||||||||||||||| ||||| |||| |||| ||| |
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|
| T |
37757125 |
cggacaattcaatcttccaggggagattattgcatgttattgcagctataccaatacattcaaacaatgaagagtaagacataatattgcttcatcaaca |
37757026 |
T |
|
| Q |
101 |
acgttaaattggat--------tgtcatgtgttgtcattttatggtttacatgttgtaggaacaatgtttccaaggaccaaggaacaaaaactctcaaac |
192 |
Q |
| |
|
||||||||| || | |||||| |||||||||||||||||||||||||||||||||| | ||||||| | ||||||||||||| |
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|
| T |
37757025 |
gtgttaaattgtatatttgcattatcatgtattgtcattttatggtttacatgttgtaggaacaa---------gaaccaaggctctaaaactctcaaac |
37756935 |
T |
|
| Q |
193 |
aacgaagagaagaagagaggaaagtagccgaagctagtggagataccagagcatgaaatagcctgttcatgcgctctgataccgtatgtttctttatggt |
292 |
Q |
| |
|
||||||||| ||||| ||||||| ||| ||||||| ||||||||||||||||| ||||| |||||||||||| ||||||| ||||||||| ||| | | |
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|
| T |
37756934 |
aacgaagagtggaagaaaggaaagcagctgaagctaaaggagataccagagcatggaatagtctgttcatgcgccctgatacagtatgtttccttacgat |
37756835 |
T |
|
| Q |
293 |
taatgaatggaaagctatgattctattatttcatccttttttagtagccaatgttgaaataatatattgaagttctgaataatgtttattttgtct--at |
390 |
Q |
| |
|
| ||| |||| |||||||||||||||||||||||||| ||| |||||| || |||| | ||| | ||| ||||||||| ||||||| ||| || |
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|
| T |
37756834 |
ga---aattgaaatttatgattctattatttcatcctttttgagttgccaatttttcaatagttcattcatgttttgaataatgcttattttatcttcat |
37756738 |
T |
|
| Q |
391 |
aatttctgtagaaaatcacaacttgt |
416 |
Q |
| |
|
| ||||| |||||| ||||||||||| |
|
|
| T |
37756737 |
attttctatagaaagtcacaacttgt |
37756712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 37762873 - 37762460
Alignment:
| Q |
1 |
cggacaattcaatcttccaggggagattattacatgttatgccagctataccaagacgttcaaacaatgaagagtaaggaataatgttgcatcatggaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |||||||||||| || |||||||||||||||||||| ||||| |||| |||| ||| |
|
|
| T |
37762873 |
cggacaattcaatcttccaggggagattattgcatgttattgcagctataccaatacattcaaacaatgaagagtaagacataatattgcttcatcaaca |
37762774 |
T |
|
| Q |
101 |
acgttaaattggat--------tgtcatgtgttgtcattttatggtttacatgttgtaggaacaatgtttccaaggaccaaggaacaaaaactctcaaac |
192 |
Q |
| |
|
||||||||| || | |||||| |||||||||||||||||||||||||||||||||| | ||||||| | ||||||||||||| |
|
|
| T |
37762773 |
gtgttaaattgtatatttgcattatcatgtattgtcattttatggtttacatgttgtaggaacaa---------gaaccaaggctctaaaactctcaaac |
37762683 |
T |
|
| Q |
193 |
aacgaagagaagaagagaggaaagtagccgaagctagtggagataccagagcatgaaatagcctgttcatgcgctctgataccgtatgtttctttatggt |
292 |
Q |
| |
|
||||||||| ||||| ||||||| ||| ||||||| ||||||||||||||||| ||||| |||||||||||| ||||||| ||||||||| ||| | | |
|
|
| T |
37762682 |
aacgaagagtggaagaaaggaaagcagctgaagctaaaggagataccagagcatggaatagtctgttcatgcgccctgatacagtatgtttccttacgat |
37762583 |
T |
|
| Q |
293 |
taatgaatggaaagctatgattctattatttcatccttttttagtagccaatgttgaaataatatattgaagttctgaataatgtttattttgtct--at |
390 |
Q |
| |
|
| ||| |||| |||||||||||||||||||||||||| ||| |||||| || |||| | ||| | ||| ||||||||| ||||||| ||| || |
|
|
| T |
37762582 |
ga---aattgaaatttatgattctattatttcatcctttttgagttgccaatttttcaatagttcattcatgttttgaataatgcttattttatcttcat |
37762486 |
T |
|
| Q |
391 |
aatttctgtagaaaatcacaacttgt |
416 |
Q |
| |
|
| ||||| |||||| ||||||||||| |
|
|
| T |
37762485 |
attttctatagaaagtcacaacttgt |
37762460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 117 - 416
Target Start/End: Original strand, 38604154 - 38604444
Alignment:
| Q |
117 |
tcatgtgttgtcattttatggtttacatgttgtaggaacaatgtttccaaggaccaaggaacaaaaactctcaaacaacgaagagaagaagagaggaaag |
216 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| ||||||||| | ||||||| ||||||||||||||| ||||| ||||||| |
|
|
| T |
38604154 |
tcatgtattgtcattttatggtttacatgttgtaggaacaa---------ggaccaaggctctaaaactcacaaacaacgaagagaggaagaaaggaaag |
38604244 |
T |
|
| Q |
217 |
tagccgaagctagtggagataccagagcatgaaatagcctgttcatgcgctctgataccgtatgtttctttatggttaatgaatggaaagctatgattct |
316 |
Q |
| |
|
||| ||||||| ||||||||||||||||| ||||| |||||||||||| ||||| ||||||||| ||||| | | ||| ||||||||||||| | |
|
|
| T |
38604245 |
cagctgaagctaaaggagataccagagcatggaatagtctgttcatgcgccaggatacagtatgtttccttatgatga---aattgaaagctatgattat |
38604341 |
T |
|
| Q |
317 |
attatttcatccttttttagtagccaatgttgaaataatatattgaagttctgaataatgtttattttgtct--ataatttct-gtagaaaatcacaact |
413 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| |||| | ||||| | ||||||||||| || |||| ||| ||| ||||| ||||||| |||||||| |
|
|
| T |
38604342 |
attatttcatcctttttgagtagccaattttgcaatagttcattgatgctctgaataatgcttgttttatcttcatattttctagtagaaagtcacaact |
38604441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 585 - 671
Target Start/End: Original strand, 38605179 - 38605264
Alignment:
| Q |
585 |
acaccctttgccaact-ttatactttgttttggaattttacttattttccctctagttgtttatatctcctcttgcttttcaaatatt |
671 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||| ||||||||||| | |||| |||||||| |||||||||||||||||||||| |
|
|
| T |
38605179 |
acaccctttgccaactgttgtactttgttttggaagattacttatttttcgtctatttgtttat--ctcctcttgcttttcaaatatt |
38605264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 38603467 - 38603511
Alignment:
| Q |
4 |
acaattcaatcttccaggggagattattacatgttatgccagcta |
48 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||| ||||||| |
|
|
| T |
38603467 |
acaattcaatcttccaggggagattattgcgtgttataccagcta |
38603511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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