View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18317_low_62 (Length: 309)
Name: NF18317_low_62
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_low_62 |
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Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 14 - 293
Target Start/End: Complemental strand, 37806782 - 37806503
Alignment:
| Q |
14 |
ctatatcatctaatatggaacggaggaattagtaaaaaatttttagatattaaatattttcaacacttataattaacactcattcaccacttaatttttt |
113 |
Q |
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|||||||||||||||||||||||||| | ||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37806782 |
ctatatcatctaatatggaacggagggagtagtagaaaattgttagacattaaatattttcaacacttataattaacactcattcaccacttaatttttt |
37806683 |
T |
|
| Q |
114 |
ctttatgtttttcctcttatcaaaacacttatcaatcagattgtgattatgtttcttttctctcaaattgaacatggggtgtatgaatgtacattatttt |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
37806682 |
ctttatgtttttcctcttatcaaaacacttatcaatcagattgtgattatgtttcttctctctcaaattaaacatggggtgtatgaatgaacattatttt |
37806583 |
T |
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| Q |
214 |
ccaaataaaaaacgataaacacttttaaatgacctggtacaacaggaatacattaggagtttaggaccacaagttgatac |
293 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
37806582 |
ccaaataaaaaacgataaacacttttaaatgagctggtacaacaggagtacatttggagtttaggaccacaagttgatac |
37806503 |
T |
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