View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18317_low_68 (Length: 305)
Name: NF18317_low_68
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_low_68 |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 21 - 290
Target Start/End: Original strand, 38268163 - 38268433
Alignment:
| Q |
21 |
cagtccaatttctcattcagatgaatttgacgatgttgtcaaggtttacaataaatttttactacgctatgaacaactctattaacttagttctatattt |
120 |
Q |
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| T |
38268163 |
cagtccaatttctcattcagatgaatttgacgatgttgtcaaggtttacaataaatttttactacgctatgaacaactctattaacttagttctatattt |
38268262 |
T |
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| Q |
121 |
ttac-atgtggcttatgcttattcctgttaatgtatgtgcagttttttcggacaaacaattccattcacccattattcaatggtggaagagcaagtgcag |
219 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
38268263 |
ttactatgtggcttatgcttattcctgttaatgtatgtgcagttttttcggacaaacaattccattcacccattattcaatggtggaagagcaagtgccg |
38268362 |
T |
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| Q |
220 |
gtgttggcaacggcacggcttgttcaggacctaaaactgtaggaaggtggttgaaagagagaagagaaaag |
290 |
Q |
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| T |
38268363 |
gtgttggcaacggcacggcttgttcaggacctaaaactgtaggaaggtggttgaaagagagaagagaaaag |
38268433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 173 - 277
Target Start/End: Original strand, 38312118 - 38312222
Alignment:
| Q |
173 |
aaacaattccattcacccattattcaatggtggaagagcaagtgcaggtgttggcaacggcacggcttgttcaggacctaaaactgtaggaaggtggttg |
272 |
Q |
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| T |
38312118 |
aaacaattccattcacccattatctaatggtggaagagcaactgctgctgttggcagcagcacaacttgttcaggacctaaaactgtaagaagatggttg |
38312217 |
T |
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| Q |
273 |
aaaga |
277 |
Q |
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||||| |
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| T |
38312218 |
aaaga |
38312222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 213
Target Start/End: Original strand, 38271260 - 38271319
Alignment:
| Q |
155 |
tgtgcagttttttcggacaaaca-attccattcacccattattcaatggtggaagagcaa |
213 |
Q |
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| T |
38271260 |
tgtgcagttttttcggacaaactcattccattcaccaattattcattggtggaagagcaa |
38271319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 104
Target Start/End: Original strand, 38311999 - 38312078
Alignment:
| Q |
25 |
ccaatttctcattcagatgaatttgacgatgttgtcaaggtttacaataaatttttactacgctatgaacaactctatta |
104 |
Q |
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| T |
38311999 |
ccaatttgtcattcagatcaatttgacgatgttgtcaacatatataatcaatttttactaagctacgagcaactctatta |
38312078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 84
Target Start/End: Original strand, 38271150 - 38271209
Alignment:
| Q |
25 |
ccaatttctcattcagatgaatttgacgatgttgtcaaggtttacaataaatttttacta |
84 |
Q |
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| T |
38271150 |
ccaatttcacattcagatgaatgtgatgatgtttttaaggtatacaataaattcttacta |
38271209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 157 - 289
Target Start/End: Complemental strand, 31707795 - 31707660
Alignment:
| Q |
157 |
tgcagttttttcggacaaacaattccattcacccattattcaatggtggaagagcaa---gtgcaggtgttggcaacggcacggcttgttcaggacctaa |
253 |
Q |
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||||||||||||| ||||||||||||| ||||| |||||||||||| |||||||| || || ||||||| | || |||||||||||||||| |
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| T |
31707795 |
tgcagttttttcgtgcaaacaattccatacaccctttattcaatggtacaagagcaatgagtagtggaattggcaatgcaactccttgttcaggacctaa |
31707696 |
T |
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| Q |
254 |
aactgtaggaaggtggttgaaagagagaagagaaaa |
289 |
Q |
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||| |||||||| ||||||||||| ||||||||||| |
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| T |
31707695 |
aacagtaggaagatggttgaaagaaagaagagaaaa |
31707660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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