View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18317_low_7 (Length: 661)
Name: NF18317_low_7
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_low_7 |
 | |
|
| [»] scaffold0141 (2 HSPs) |
| | |
|
| [»] scaffold0638 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 365; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 240 - 616
Target Start/End: Complemental strand, 8429923 - 8429547
Alignment:
| Q |
240 |
attgtgttacaatagtttaggctagttaagtttcacacagttacttgctacacaagtaacaaatgcatctcaagctaattatcccataacaagtacaaaa |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8429923 |
attgtgttacaatagtttaggctagttaagtttcacacagttacttgctacacaagtaacaaatgcatctcaagctaattatcccataacaagtacaaaa |
8429824 |
T |
|
| Q |
340 |
ctccatatttcctatttcaactatctgtattattaaaactttctaataaccttgataattttaaacatcaatatgaagtcctgcaaaaatgctcgctggc |
439 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8429823 |
ctccagatttcctatttcaactatctgtattattaaaactttctaataaccttgataattttaaacatcaatatgaagtcctgcaaaaatgctcgctggc |
8429724 |
T |
|
| Q |
440 |
atcagcacattaaagccttgtcctctgcatatctgctacaccaatattaaaaaccaaacagaagctttgaacatgtgggagacgaagatgagaaagaagc |
539 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8429723 |
atcggcacattaaagccttgtcctctgcatatctgctacaccaatattaaaaaccaaacagaagctttgaacatgtgggagacgaagatgagaaagaagc |
8429624 |
T |
|
| Q |
540 |
aaattttaaaaatttcatctatcccacaaacaagagaacaacatctcttcaattcaacaccaaaatgatgaagtggc |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
8429623 |
aaattttaaaaatttcatctatcccacaaacaagagaacagcatctcttcaattcaacaccaaaatgatgaagtggc |
8429547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 240 - 616
Target Start/End: Original strand, 8449488 - 8449869
Alignment:
| Q |
240 |
attgtgttacaatagtttaggctagttaagtttcacacagttacttgctacacaagtaacaaatgcatctcaagctaattatcccataacaagtacaaaa |
339 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
8449488 |
attgtgttacaatagttctggctagttaagtttcacacagttacttgctacacaagtaacaaatgcatctcaagctaattatcccttaacaagtacaaaa |
8449587 |
T |
|
| Q |
340 |
ctccatatttcctatttcaactatctgtattattaaaactttctaataaccttgataattttaaacatcaatatgaagtcctgcaaaaatgctcgct--- |
436 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8449588 |
ctccagatttcctatttcaactatctgtattattaaaactttctaataaccttgataattttaaacatcaatatgaagtcctgcaaaaatgctcgctggc |
8449687 |
T |
|
| Q |
437 |
---ggcatcagcacattaaagccttgtcctctgcatatctgctacaccaatattaaaaaccaaacagaagctttgaacatgtgggagacgaagatgagaa |
533 |
Q |
| |
|
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8449688 |
accggcaccggcacattaaagccttgtcctctgcatatctgctacaccaatattaaaaaccaaacagaagctttgaacatgtgggagacgaagatgagaa |
8449787 |
T |
|
| Q |
534 |
agaagcaaattttaaaaatttcatctatcccacaaacaagagaacaacatctcttcaattcaacaccaaaatgatgaagtggc |
616 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
8449788 |
agaagcaaattttaaaaattttatctatcccacaaac-agagaacagcatctcttcaattcaacaccaaaatgatgaagtggc |
8449869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 4 - 194
Target Start/End: Complemental strand, 8430159 - 8429969
Alignment:
| Q |
4 |
atgtcgaagaatatgattgtgatattaaactattttcagtattgttaaaggtaatctcaaactccatgaaagcaaagattaagcttgcaatgtgcatagc |
103 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8430159 |
atgtccaaaaatatgattgtgatattaaactattttcagtattgttaaaggtaatctcaaactccatgaaagcaaagattaagcttgcaatgtgcatagc |
8430060 |
T |
|
| Q |
104 |
tttgaagaaaacaaaggaagtgagaaaaaggaattttattattctcaaaatctaagaattacagtgaagcactatagctttacatagagtg |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8430059 |
tttgaagaaaacaaaggaagtgagaaaaaggaattttattattctcaaaatctaagaattacagtgaagcactatagctttacatagagtg |
8429969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 4 - 194
Target Start/End: Original strand, 8449252 - 8449442
Alignment:
| Q |
4 |
atgtcgaagaatatgattgtgatattaaactattttcagtattgttaaaggtaatctcaaactccatgaaagcaaagattaagcttgcaatgtgcatagc |
103 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8449252 |
atgtccaaaaatatgattgtgatattaaactattttcagtattgttaaaggtaatctcaaactccatgaaagcaaagattaagcttgcaatgtgcatagc |
8449351 |
T |
|
| Q |
104 |
tttgaagaaaacaaaggaagtgagaaaaaggaattttattattctcaaaatctaagaattacagtgaagcactatagctttacatagagtg |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8449352 |
tttgaagaaaacaaaggaagtgagaaaaaggcattttattattctcaaaatctaagaattacagtgaagcactatagctttacatagagtg |
8449442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 146
Target Start/End: Original strand, 25973850 - 25973954
Alignment:
| Q |
43 |
tattgttaa-aggtaatctcaaactccatgaaagcaa-agattaagcttgcaatgtgcatagctttgaagaaaacaaaggaagtgagaaaaaggaatttt |
140 |
Q |
| |
|
||||||||| ||| |||||||| | |||||||||||| | | ||||||||||||||||| |||| ||||||| | |||| || |||||||| | || ||| |
|
|
| T |
25973850 |
tattgttaagaggcaatctcaatccccatgaaagcaagaaaataagcttgcaatgtgcaaagctatgaagaaga-aaagaaaatgagaaaaggaaaattt |
25973948 |
T |
|
| Q |
141 |
attatt |
146 |
Q |
| |
|
|||||| |
|
|
| T |
25973949 |
attatt |
25973954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0141 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: scaffold0141
Description:
Target: scaffold0141; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 240 - 616
Target Start/End: Original strand, 7625 - 7999
Alignment:
| Q |
240 |
attgtgttacaatagtttaggctagttaagtttcacacagttacttgctacacaagtaacaaatgcatctcaagctaattatcccataacaagtacaaaa |
339 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
7625 |
attgtgttacaatagtttaggctagttaagtttcacacagttacttgctacacaagtaacaaatgcatctcaagctaattatcccttaacaagtacaaaa |
7724 |
T |
|
| Q |
340 |
ctccatatttcctatttcaactatctgtattattaaaactttctaataaccttgataattttaaacatcaatatgaagtcctgc-aaaaatgctcgctgg |
438 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| | |
|
|
| T |
7725 |
ctccagatttcctatttcaactatctgtattattaaaactttctaataaccttgataattttaaacatcagtatgaagtcctgcaaaaaatgctcgc--g |
7822 |
T |
|
| Q |
439 |
catcagcacattaaagccttgtcctctgcatatctgctacaccaatattaaaaaccaaacagaagctttgaacatgtgggagacgaagatgagaaagaag |
538 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7823 |
catcggcacattaaagccttgtcctctgcgtatctgctacaccaatattaaaaaccaatcagaagctttgaacatgtgggagacgaagatgagaaagaag |
7922 |
T |
|
| Q |
539 |
caaattttaaaaatttcatctatcccacaaacaagagaacaacatctcttcaattcaacaccaaaatgatgaagtggc |
616 |
Q |
| |
|
||||||| ||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
7923 |
caaatttaaaaaatttcatctatcccacagac-agagaacagcatctcttcaattcaacaccaaaatgatgaagtggc |
7999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0141; HSP #2
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 4 - 194
Target Start/End: Original strand, 7389 - 7579
Alignment:
| Q |
4 |
atgtcgaagaatatgattgtgatattaaactattttcagtattgttaaaggtaatctcaaactccatgaaagcaaagattaagcttgcaatgtgcatagc |
103 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
7389 |
atgtccaaaaatatgattgtgatattaaactattttcagtattgttaaaggtaatctcaaactccattaaagcaaagattaagcttgcaatgtgcatagc |
7488 |
T |
|
| Q |
104 |
tttgaagaaaacaaaggaagtgagaaaaaggaattttattattctcaaaatctaagaattacagtgaagcactatagctttacatagagtg |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7489 |
tttgaagaaaacaaaggaagtgagaaaaaggcattttattattctcaaaatctaagaattacagtgaagcactatagctttacatagagtg |
7579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 123; Significance: 7e-63; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 52 - 194
Target Start/End: Original strand, 4238600 - 4238742
Alignment:
| Q |
52 |
aggtaatctcaaactccatgaaagcaaagattaagcttgcaatgtgcatagctttgaagaaaacaaaggaagtgagaaaaaggaattttattattctcaa |
151 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4238600 |
aggtaatctcaaactccatgaaagcaaaggttaagcttgcaatgtgcatagatttgaagaaaacaaaggaagtgagaaaaaggaattttattattctcaa |
4238699 |
T |
|
| Q |
152 |
aatctaagaattacagtgaagcactatagctttacatagagtg |
194 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||| |||||||| |
|
|
| T |
4238700 |
aatctaagtattacaatgaagcactatagctttatatagagtg |
4238742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 245 - 323
Target Start/End: Original strand, 4238913 - 4238991
Alignment:
| Q |
245 |
gttacaatagtttaggctagttaagtttcacacagttacttgctacacaagtaacaaatgcatctcaagctaattatcc |
323 |
Q |
| |
|
||||||| ||||| ||||||| ||||||||| |||| |||||||||||||||||| ||||||| ||| |||||||||| |
|
|
| T |
4238913 |
gttacaaccgtttaagctagttgagtttcacatagttgcttgctacacaagtaacatatgcatcccaatctaattatcc |
4238991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 346 - 432
Target Start/End: Complemental strand, 3750969 - 3750881
Alignment:
| Q |
346 |
atttcctatttcaactatctgtat-tattaaaactttctaataaccttgataa-ttttaaacatcaatatgaagtcctgcaaaaatgct |
432 |
Q |
| |
|
||||| |||||||||||||| ||| | | |||||||||||||| |||||||| |||| |||||||| |||| |||| |||||||||| |
|
|
| T |
3750969 |
atttcatatttcaactatctctatctctctaaactttctaataaacttgataagctttacacatcaatctgaaatccttcaaaaatgct |
3750881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 260 - 312
Target Start/End: Original strand, 44272572 - 44272624
Alignment:
| Q |
260 |
gctagttaagtttcacacagttacttgctacacaagtaacaaatgcatctcaa |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
44272572 |
gctagttaagtttcacacagttacttgctacacaagtaacatatacatctcaa |
44272624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 166
Target Start/End: Complemental strand, 14973490 - 14973383
Alignment:
| Q |
57 |
atctcaaactccatgaaagcaaagattaagcttgcaatgtgcatagctttgaagaaaacaaaggaagtgagaaaaaggaattttattattctcaaaatct |
156 |
Q |
| |
|
||||||||||||||||||| | | | ||||||||||| | ||||||| ||||||| |||||| | || |||| | ||||||||| ||||| |||||||| |
|
|
| T |
14973490 |
atctcaaactccatgaaagtagaaaataagcttgcaa--tacatagctatgaagaagacaaagtatgtaagaagagggaattttactattcccaaaatct |
14973393 |
T |
|
| Q |
157 |
aagaattaca |
166 |
Q |
| |
|
|| |||||| |
|
|
| T |
14973392 |
gagtattaca |
14973383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 320
Target Start/End: Original strand, 33894486 - 33894552
Alignment:
| Q |
254 |
gtttaggctagttaagtttcacacagttacttgctacacaagtaacaaatgcatctcaagctaatta |
320 |
Q |
| |
|
|||||||| |||||||||| | ||||||||||||||| ||||||||||||| | ||||||||||| |
|
|
| T |
33894486 |
gtttaggcaagttaagttttaaacagttacttgctacccaagtaacaaatgtaatacaagctaatta |
33894552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 8564561 - 8564480
Alignment:
| Q |
83 |
taagcttgcaatgtgcatagctttgaagaaaacaaaggaagtgagaaaaaggaattttattattctcaaaatctaagaatta |
164 |
Q |
| |
|
|||| ||||||||||||||| ||| ||||| |||||| ||||| ||| ||||||||| ||||||| ||||| |||| |||| |
|
|
| T |
8564561 |
taagattgcaatgtgcatagatttaaagaagacaaagaaagtgtgaacaaggaatttcattattcagaaaatgtaagtatta |
8564480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0638 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0638
Description:
Target: scaffold0638; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 52 - 156
Target Start/End: Original strand, 7948 - 8051
Alignment:
| Q |
52 |
aggtaatctcaaactccatgaaagcaaagattaagcttgcaatgtgcatagctttgaagaaaacaaaggaagtgagaaaaaggaattttattattctcaa |
151 |
Q |
| |
|
||||||||||||||| |||||||| || | || ||| |||||||||| ||||| ||||| |||| | | ||||||| |||||| |||||||||| ||| |
|
|
| T |
7948 |
aggtaatctcaaacttcatgaaagtgaaaaatagacttacaatgtgcatggctttaaagaagacaaggaaggtgagaagaaggaa-tttattattcacaa |
8046 |
T |
|
| Q |
152 |
aatct |
156 |
Q |
| |
|
||||| |
|
|
| T |
8047 |
aatct |
8051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University