View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18317_low_72 (Length: 302)
Name: NF18317_low_72
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_low_72 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 49558751 - 49558459
Alignment:
| Q |
1 |
tactagcagaccttctataatatgtactagtgatttgaaaaaggctttggaggagattaaggaattagggtttcaaccttccaaatacaacttttgtgta |
100 |
Q |
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| T |
49558751 |
tactagcagaccttctataatatgtactagtgatttgaaaaaggctttggaggagattaaggaattagggtttcaaccttccaaatacaacttttgtgta |
49558652 |
T |
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| Q |
101 |
gcattattggccaaaagggctgtcaccaaatcccagtgggatgctaaatttgatgtcttgaagagttggggttgttctgaagatgatatttttaatgcat |
200 |
Q |
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| T |
49558651 |
gcattattggccaaaagggctgtcaccaaatcccagtgggatgctaaatttgatgtcttgaagagttggggttgttctgaagatgatatttttaatgcat |
49558552 |
T |
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| Q |
201 |
ttaggaagcaacccaactttatgttacggtctccagacaaactcagttcagtgatgagattttgggtcgatgagcttgggtgggatcctttgct |
294 |
Q |
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| T |
49558551 |
ttaggaagcaacccaactttatgttacggtctccagacaaactca-atcagtgatgagattttgggtcgatgagcttgggtgggatcctttgct |
49558459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 49904516 - 49904805
Alignment:
| Q |
1 |
tactagcagaccttctataatatgtactagtgatttgaaaaaggctttggaggagattaaggaattagggtttcaaccttccaaatacaacttttgtgta |
100 |
Q |
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| T |
49904516 |
tactagcagaccttccacaatatgttgtactgatttgaaaaaggctttggaggagattaaggaattagggtttcaaccttccaaatacaatttttgtgta |
49904615 |
T |
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| Q |
101 |
gcattattggccaaaagggctgtcaccaaatcccagtgggatgctaaatttgatgtcttgaagagttggggttgttctgaagatgatatttttaatgcat |
200 |
Q |
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| T |
49904616 |
gcattattggccaaaagggctgtcaccaaatcccaatgggatgccaaagttgatgtcttgaagagttggggttgttctgaagatgcagtttttaatgcat |
49904715 |
T |
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| Q |
201 |
ttaggaagcaacccaactttatgttacggtctccagacaaactcagttcagtgatgagattttgggtcgatgagcttgggtgggatcctt |
290 |
Q |
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| T |
49904716 |
ttaggaagcaacccaactttatgctaaggtctccagataaactcaatgcagtgatgagtttttgggtcgaggagcttggttgggatcctt |
49904805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 43 - 203
Target Start/End: Complemental strand, 49562872 - 49562712
Alignment:
| Q |
43 |
ggctttggaggagattaaggaattagggtttcaaccttccaaatacaacttttgtgtagcattattggccaaaagggctgtcaccaaatcccagtgggat |
142 |
Q |
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| T |
49562872 |
ggctgtggaggagattaaggaattagggtttcatccttctagttacaatttttgtgtcgcattgttggccaaaaaggccatcactaaatcccaatgggat |
49562773 |
T |
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| Q |
143 |
gctaaatttgatgtcttgaagagttggggttgttctgaagatgatatttttaatgcattta |
203 |
Q |
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| T |
49562772 |
tccaaagtcgatgccttgaagagctggggttattctgaagatgcaattttaactgcattta |
49562712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 167
Target Start/End: Complemental strand, 9421406 - 9421325
Alignment:
| Q |
86 |
tacaacttttgtgtagcattattggccaaaagggctgtcaccaaatcccagtgggatgctaaatttgatgtcttgaagagtt |
167 |
Q |
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| T |
9421406 |
tacaatttttgtgtggcattacccgacaaaagggctatcaccaaatcccaatgggatgccaaagttgatgccttgaagagtt |
9421325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 167
Target Start/End: Complemental strand, 9441451 - 9441370
Alignment:
| Q |
86 |
tacaacttttgtgtagcattattggccaaaagggctgtcaccaaatcccagtgggatgctaaatttgatgtcttgaagagtt |
167 |
Q |
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| T |
9441451 |
tacaatttttgtgtggcattaccggccaaaagggctatctccaaatcccaatgggacgccaaagttgatgcctcgaagagtt |
9441370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 41488411 - 41488351
Alignment:
| Q |
8 |
agaccttctataatatgtactagtgatttgaaaaaggctttggaggagattaaggaattag |
68 |
Q |
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| T |
41488411 |
agaccttctataatatgtcctactaatttgaaaaacgttgaggaggagattaaggagttag |
41488351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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