View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18317_low_74 (Length: 300)

Name: NF18317_low_74
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18317_low_74
NF18317_low_74
[»] chr5 (13 HSPs)
chr5 (35-288)||(29416663-29416916)
chr5 (35-255)||(24655465-24655685)
chr5 (36-222)||(16486686-16486872)
chr5 (83-266)||(28019149-28019332)
chr5 (69-251)||(42840413-42840595)
chr5 (83-263)||(42777786-42777969)
chr5 (36-196)||(39724526-39724685)
chr5 (83-220)||(42800714-42800851)
chr5 (83-168)||(37408337-37408422)
chr5 (83-154)||(41996220-41996291)
chr5 (83-162)||(42413994-42414073)
chr5 (86-162)||(42411826-42411902)
chr5 (173-265)||(42564857-42564949)
[»] chr8 (2 HSPs)
chr8 (74-146)||(15631867-15631939)
chr8 (74-146)||(15600584-15600656)
[»] chr4 (1 HSPs)
chr4 (100-262)||(1327280-1327442)
[»] chr1 (1 HSPs)
chr1 (96-142)||(19219195-19219241)
[»] scaffold0129 (1 HSPs)
scaffold0129 (87-164)||(33538-33615)


Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 35 - 288
Target Start/End: Complemental strand, 29416916 - 29416663
Alignment:
Q  35 cctattaaatgggtccattgctttcataatgagttatatagagacaggtacatttcacatttcaattttgggagaactcggtgtaaaggaatcgtggact 134  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  29416916 cctattaaatgggtctattgctttcataataagttatatagagacaggtacatttcacatttcaattttgggagaactcggtgtaaaggaatcatggact 29416817  T
Q  135 aagatctttattgtagggccctttccttgccttgagtgtcctatcggagcaggaaagaagggagatatgttgttcataaagaaagacggcgaattagctt 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29416816 aagatctttattgtagggccctttccttgccttgagtgtcctatcggagcaggaaagaagggagatatgttgttcataaagaaagacggcgaattagctt 29416717  T
Q  235 gggttgatttaaatacccaaataattgaggactcgggtgtcatagcagagagga 288  Q
    || ||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  29416716 ggattgatttaaatacccaaataattgaggactcgggtgttataacagagagga 29416663  T

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Target: chr5; HSP #2
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 35 - 255
Target Start/End: Original strand, 24655465 - 24655685
Alignment:
Q  35 cctattaaatgggtccattgctttcataatgagttatatagagacaggtacatttcacatttcaattttgggagaactcggtgtaaaggaatcgtggact 134  Q
    ||||||||| ||||| |||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  24655465 cctattaaacgggtctattgctttcatagtaagttataaagagacaggtacatttcacatttcaattttgggagaactcggtgtaaaggaatcatggact 24655564  T
Q  135 aagatctttattgtagggccctttccttgccttgagtgtcctatcggagcaggaaagaagggagatatgttgttcataaagaaagacggcgaattagctt 234  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||   |||||||||||| |||| ||||    
T  24655565 aagatctttattgtagggccctttccttgccttgagtatcctatcggagctggaaagaagggcgatatgttgttccggaagaaagacggcaaattcgctt 24655664  T
Q  235 gggttgatttaaatacccaaa 255  Q
    || ||||||||||||||||||    
T  24655665 ggtttgatttaaatacccaaa 24655685  T

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Target: chr5; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 36 - 222
Target Start/End: Complemental strand, 16486872 - 16486686
Alignment:
Q  36 ctattaaatgggtccattgctttcataatgagttatatagagacaggtacatttcacatttcaattttgggagaactcggtgtaaaggaatcgtggacta 135  Q
    |||||| ||||||| |||||||||||  | | ||| |||||||| ||||||||||||||||||||||| || ||| | ||||||||| |||| |||| ||    
T  16486872 ctattagatgggtctattgctttcatcttaaattacatagagacgggtacatttcacatttcaattttaggtgaatttggtgtaaagaaatcatggatta 16486773  T
Q  136 agatctttattgtagggccctttccttgccttgagtgtcctatcggagcaggaaagaagggagatatgttgttcataaagaaagacg 222  Q
    ||||||| ||| |||||||||| ||||  ||||||| |||||| ||||| ||||||||||| ||||||||||||| ||| |||||||    
T  16486772 agatcttcattttagggcccttaccttatcttgagtatcctattggagccggaaagaagggtgatatgttgttcagaaaaaaagacg 16486686  T

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Target: chr5; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 83 - 266
Target Start/End: Original strand, 28019149 - 28019332
Alignment:
Q  83 tacatttcacatttcaattttgggagaactcggtgtaaaggaatcgtggactaagatctttattgtagggccctttccttgccttgagtgtcctatcgga 182  Q
    |||| ||||||||||||| ||||| |||||  ||||||||||||| |||||||| |||||  ||||||| || || ||||||||||||  ||| ||||||    
T  28019149 tacaattcacatttcaatcttgggtgaacttagtgtaaaggaatcatggactaaaatcttcgttgtaggaccattaccttgccttgagcatccaatcgga 28019248  T
Q  183 gcaggaaagaagggagatatgttgttcataaagaaagacggcgaattagcttgggttgatttaaatacccaaataattgaggac 266  Q
    || ||||||||||| ||||||||||||| |||||||||||||| | |||  ||| | || |||||||||||||| || ||||||    
T  28019249 gcgggaaagaagggtgatatgttgttcaaaaagaaagacggcggactagtctggttcgacttaaatacccaaatgatggaggac 28019332  T

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Target: chr5; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 69 - 251
Target Start/End: Complemental strand, 42840595 - 42840413
Alignment:
Q  69 tatatagagacaggtacatttcacatttcaattttgggagaactcggtgtaaaggaatcgtggactaagatctttattgtagggccctttccttgccttg 168  Q
    |||| |||||||  |||||||||||||||||||||||| ||||| |||||||| ||||| ||||||||  |||||||||| || ||||| ||||||||||    
T  42840595 tataaagagacaactacatttcacatttcaattttgggtgaacttggtgtaaaagaatcatggactaaagtctttattgttggtcccttaccttgccttg 42840496  T
Q  169 agtgtcctatcggagcaggaaagaagggagatatgttgttcataaagaaagacggcgaattagcttgggttgatttaaatacc 251  Q
    ||| ||| || |||||||| ||||||||  |||| ||| | ||||| ||||||   ||| |||||||| ||||||||| ||||    
T  42840495 agtatccaattggagcagggaagaagggcaatatattgattataaaaaaagacaatgaactagcttggtttgatttaagtacc 42840413  T

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Target: chr5; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 83 - 263
Target Start/End: Original strand, 42777786 - 42777969
Alignment:
Q  83 tacatttcacatttcaattttgggagaactcggtgtaaaggaatcgtggactaagatctttattgtagggccctttccttgccttgagtgtc---ctatc 179  Q
    ||||||||||||||||||||| || |||||||||||||| ||||| |||||||||||||| |||||||||||||| ||||| || |||| ||    ||||    
T  42777786 tacatttcacatttcaattttaggcgaactcggtgtaaaagaatcatggactaagatcttcattgtagggcccttaccttgtctcgagtatcttattatc 42777885  T
Q  180 ggagcaggaaagaagggagatatgttgttcataaagaaagacggcgaattagcttgggttgatttaaatacccaaataattgag 263  Q
     |||||||||||||||| ||  ||||| ||  ||| |||||||  |||   |||||| | ||||||||||| ||||| ||||||    
T  42777886 cgagcaggaaagaagggtgaggtgttggtcgcaaaaaaagacgctgaacatgcttggttcgatttaaatactcaaatgattgag 42777969  T

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Target: chr5; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 36 - 196
Target Start/End: Complemental strand, 39724685 - 39724526
Alignment:
Q  36 ctattaaatgggtccattgctttcataatgagttatatagagacaggtacatttcacatttcaattttgggagaactcggtgtaaaggaatcgtggacta 135  Q
    |||||||||||||| |||||||||||  | | | |||| | | || ||||||||||||| ||||||||||| ||||||||| |||| ||||| |||||||    
T  39724685 ctattaaatgggtctattgctttcattttaaat-atatcggggcatgtacatttcacatatcaattttgggggaactcggtataaaagaatcatggacta 39724587  T
Q  136 agatctttattgtagggccctttccttgccttgagtgtcctatcggagcaggaaagaaggg 196  Q
    |  |||| ||||| || || || ||||||||||| | ||| |||||||| || ||||||||    
T  39724586 aactcttcattgttggacctttaccttgccttgattatccaatcggagcgggtaagaaggg 39724526  T

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Target: chr5; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 83 - 220
Target Start/End: Complemental strand, 42800851 - 42800714
Alignment:
Q  83 tacatttcacatttcaattttgggagaactcggtgtaaaggaatcgtggactaagatctttattgtagggccctttccttgccttgagtgtcctatcgga 182  Q
    |||||||||||||| |||||| |   |||||| ||||| |||||| |||||||| ||||| |  |||||||| || ||||||||||| | |||| |||||    
T  42800851 tacatttcacattttaattttagacaaactcgatgtaatggaatcatggactaaaatcttcaccgtagggcctttaccttgccttgactatcctgtcgga 42800752  T
Q  183 gcaggaaagaagggagatatgttgttcataaagaaaga 220  Q
    || ||||||||||| ||| |||| |||| ||| |||||    
T  42800751 gcgggaaagaagggtgatctgtttttcagaaaaaaaga 42800714  T

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Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 83 - 168
Target Start/End: Complemental strand, 37408422 - 37408337
Alignment:
Q  83 tacatttcacatttcaattttgggagaactcggtgtaaaggaatcgtggactaagatctttattgtagggccctttccttgccttg 168  Q
    |||||||||||||||||||||||| || ||||||||||||||||| ||||| ||| | ||  |||| || ||||| ||||||||||    
T  37408422 tacatttcacatttcaattttgggtgagctcggtgtaaaggaatcatggacgaagctattcgttgttggacccttaccttgccttg 37408337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 83 - 154
Target Start/End: Complemental strand, 41996291 - 41996220
Alignment:
Q  83 tacatttcacatttcaattttgggagaactcggtgtaaaggaatcgtggactaagatctttattgtagggcc 154  Q
    |||||||||||||| ||||||||| ||||| | |||||||||||| ||||||||| |||| ||||| |||||    
T  41996291 tacatttcacattttaattttgggtgaacttgatgtaaaggaatcatggactaagctcttcattgttgggcc 41996220  T

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Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 162
Target Start/End: Original strand, 42413994 - 42414073
Alignment:
Q  83 tacatttcacatttcaattttgggagaactcggtgtaaaggaatcgtggactaagatctttattgtagggccctttcctt 162  Q
    |||| ||||||||||||||||||| ||| | ||||||||||| || ||||||||  |||||||||| || ||||| ||||    
T  42413994 tacaattcacatttcaattttgggcgaatttggtgtaaaggagtcatggactaaactctttattgttggacccttacctt 42414073  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 162
Target Start/End: Original strand, 42411826 - 42411902
Alignment:
Q  86 atttcacatttcaattttgggagaactcggtgtaaaggaatcgtggactaagatctttattgtagggccctttcctt 162  Q
    |||||| |||||||||||||||||| | ||  |||| ||||| ||||||||  |||| ||||| |||||||| ||||    
T  42411826 atttcatatttcaattttgggagaaattggaataaaagaatcatggactaaactcttcattgtcgggcccttacctt 42411902  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 265
Target Start/End: Complemental strand, 42564949 - 42564857
Alignment:
Q  173 tcctatcggagcaggaaagaagggagatatgttgttcataaagaaagacggcgaattagcttgggttgatttaaatacccaaataattgagga 265  Q
    |||||| ||||  |||||||||||||| || || || | ||| |||||||  ||| |||||||| |||||||||||||| | | |||||||||    
T  42564949 tcctattggagtgggaaagaagggagaaatattcttaagaaaaaaagacgatgaactagcttggattgatttaaataccaacacaattgagga 42564857  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 146
Target Start/End: Complemental strand, 15631939 - 15631867
Alignment:
Q  74 agagacaggtacatttcacatttcaattttgggagaactcggtgtaaaggaatcgtggactaagatctttatt 146  Q
    |||||||  ||||| |||||||||||||||||| |||| ||||||||  ||||| ||||||||  ||||||||    
T  15631939 agagacatctacatatcacatttcaattttgggtgaacccggtgtaatagaatcatggactaaactctttatt 15631867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 146
Target Start/End: Complemental strand, 15600656 - 15600584
Alignment:
Q  74 agagacaggtacatttcacatttcaattttgggagaactcggtgtaaaggaatcgtggactaagatctttatt 146  Q
    |||||||  ||||| |||||| ||||||||||| |||| ||||||||  ||||| ||||||||  ||||||||    
T  15600656 agagacatctacatatcacatctcaattttgggtgaacccggtgtaatagaatcatggactaaactctttatt 15600584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 262
Target Start/End: Original strand, 1327280 - 1327442
Alignment:
Q  100 ttttgggagaactcggtgtaaaggaatcgtggactaagatctttattgtagggccctttccttgccttgagtgtcctatcggagcaggaaagaagggaga 199  Q
    ||||||| ||||| ||||| |  ||||| ||||||||  |||| ||||| || ||||| ||| || | ||| ||||||| ||||||||||| || || ||    
T  1327280 ttttgggcgaacttggtgttagagaatcatggactaaactcttcattgtcggacccttgcctggcgtggagcgtcctattggagcaggaaaaaaaggcga 1327379  T
Q  200 tatgttgttcataaagaaagacggcgaattagcttgggttgatttaaatacccaaataattga 262  Q
    ||| || ||  |||| || |||   ||| |||||||  |||||||||||||||||| ||||||    
T  1327380 tatattctttctaaaaaatgacaatgaagtagcttgttttgatttaaatacccaaacaattga 1327442  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 142
Target Start/End: Complemental strand, 19219241 - 19219195
Alignment:
Q  96 tcaattttgggagaactcggtgtaaaggaatcgtggactaagatctt 142  Q
    ||||||||||| ||||||||||| |||||||| ||||||||| ||||    
T  19219241 tcaattttgggtgaactcggtgtcaaggaatcatggactaagctctt 19219195  T

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Target: scaffold0129 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 164
Target Start/End: Complemental strand, 33615 - 33538
Alignment:
Q  87 tttcacatttcaattttgggagaactcggtgtaaaggaatcgtggactaagatctttattgtagggccctttccttgc 164  Q
    ||||||||||| |||||||| ||||| ||||| ||||| || ||||||||  |||||||| | ||||| || ||||||    
T  33615 tttcacatttctattttgggtgaacttggtgtgaaggagtcttggactaaactctttattattgggcctttaccttgc 33538  T

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