View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18317_low_79 (Length: 293)
Name: NF18317_low_79
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_low_79 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 16 - 276
Target Start/End: Original strand, 46621776 - 46622050
Alignment:
| Q |
16 |
cattgttcaactttcattgctcacctaagcttttgaattaagatgctatgctaattttattgatgtaggtttcaaggcttcgttgtgtttaagcttttgg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46621776 |
cattgttcaactttcattgctcacctaagcttttgaattaagatgctatgctaattttattgatgtaggtttcaaggcttcgttgtgtttaagcttttgg |
46621875 |
T |
|
| Q |
116 |
gctctccttctatgactgtcctaattcctacacatatatatttgatgctatggtacaggaagaccatatagacttctgaag--------------aatga |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
46621876 |
gctctccttctatgactgtcctaattcctacacatatatatttgatgctatggtataggaagaccatatagacttctgaagaatgacatttgtataatga |
46621975 |
T |
|
| Q |
202 |
catttgtataagggtacagaagactcctccaaagttcattttgattgtattccatttcacaatttacatgtgatg |
276 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46621976 |
catttgtataagggtgcagaagactcctccaaagttcattttgattgtattccatttcacaatttacatgtgatg |
46622050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 19 - 276
Target Start/End: Original strand, 46627505 - 46627745
Alignment:
| Q |
19 |
tgttcaactttcattgctcacctaagcttttgaattaagatgctatgctaattttattgatgtaggtttcaaggcttcgttgtgtttaagcttttgggct |
118 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||| || | || || |
|
|
| T |
46627505 |
tgttcaactttcattgctggcctaagcttttgaattaagatgctatgctaattttattgctgtaggcttca--------ttgtgtttatgcctgtgaact |
46627596 |
T |
|
| Q |
119 |
ctccttctatgactgtcctaattcctacacatatatatttgatgctatggtacaggaagacc-atatagacttctgaagaatgacatttgtataagggta |
217 |
Q |
| |
|
|||| | || ||||||||||| ||| ||||| |||||| | || |||||||| |||||||||| ||||||||||||||||||||||| | |
|
|
| T |
46627597 |
ctccctttaagactgtcctaactcccacacacatatatgt----------tagaggaagacatatatagacttttgaagaatgacatttgtataaggttg |
46627686 |
T |
|
| Q |
218 |
cagaagactcctccaaagttcattttgattgtattccatttcacaatttacatgtgatg |
276 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
46627687 |
cagaagactcctccaaagttcattttaattgtattccatttcacaatttacacgtgatg |
46627745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 62 - 276
Target Start/End: Complemental strand, 37147318 - 37147107
Alignment:
| Q |
62 |
tatgctaattttattgatgtaggtttcaaggcttcgttgtgtttaagcttttgggctctccttctatgactgtcctaattcctacacatatatatttgat |
161 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||| || ||||||||| |||| ||||||||| || ||||||||||| |||||| |||||||| | || |
|
|
| T |
37147318 |
tatgcttattttattgctgtaggtttcaaggcttcattatgtttaagcgtttgagctctccttttaagactgtcctaactcctaccaatatatatctaat |
37147219 |
T |
|
| Q |
162 |
gctatggtacaggaagac-catatagacttctgaagaatgacatttgtataagggtacagaagactcctccaaagttcattttgattgtattccatttca |
260 |
Q |
| |
|
||||||||| |||| ||| |||||| ||| ||| |||| ||||||| ||||| || ||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
37147218 |
gctatggtagaggacgacatatataggcttttgaggaattacatttg----agggtgcaaaagactcctacaaagttcattttaattgtattccatttca |
37147123 |
T |
|
| Q |
261 |
caatttacatgtgatg |
276 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
37147122 |
taatttacatgtgatg |
37147107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University