View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18317_low_80 (Length: 293)
Name: NF18317_low_80
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_low_80 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 17 - 276
Target Start/End: Original strand, 26026093 - 26026352
Alignment:
| Q |
17 |
tgacactgacaaaacaagtgaatatccagtgaagagtttaaaccttaagatatgtcaagcaatctagaagttagaggttagacccaagtttccaatctta |
116 |
Q |
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| T |
26026093 |
tgacactgacaaaacaagtgaatatccagtgaagagtttaaaccttaagatatgtcaagcaatctagaagttagaggttagaccgaagtttccaatctta |
26026192 |
T |
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| Q |
117 |
tttagttgatccaacagattaaagagttcactaaaaatgatggtcaacgatgtcgacaacgggataataacttctttcaggaaagaaaaatttattatca |
216 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
26026193 |
tttagttgacccaacagattaaagagttcactaaaaatgatggtcaacgatgttgacaacggaataataacttctttcatgaaagaaaaatttattatca |
26026292 |
T |
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| Q |
217 |
gtaggacctgactcttgtcaataatatgaatgagttagagaggtcttgtttaatgacaca |
276 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
26026293 |
gtaggacctgactcttgtcaataataagaatgagttagagaggtcttgtttaatgacaca |
26026352 |
T |
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