View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18317_low_83 (Length: 289)
Name: NF18317_low_83
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_low_83 |
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Alignment Details
Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 177 - 272
Target Start/End: Original strand, 27324298 - 27324393
Alignment:
| Q |
177 |
cttatatgctttggtgtttgcatttgagagggtttcacactgatagtttccaattgcatcctccatgatggttcatattgttggttggtggaaatc |
272 |
Q |
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| T |
27324298 |
cttatatgctttggtgtttgcatttgagagggtttcacactgatagttcccaattgcatcctccatgatggttcatattgttggttggtggaaatc |
27324393 |
T |
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Target: chr7; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 54 - 132
Target Start/End: Original strand, 27324176 - 27324254
Alignment:
| Q |
54 |
gggaatagtgtttttcaattgcaaataagagagatttaattagacgaagcatgctttggtgcttgctttgattgatttt |
132 |
Q |
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| T |
27324176 |
gggaatagtgtttttcaattgcaaataagagagatttaattagacgaagcatgctttggtgcttgctttgattgatttt |
27324254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 177 - 272
Target Start/End: Original strand, 28359093 - 28359188
Alignment:
| Q |
177 |
cttatatgctttggtgtttgcatttgagagggtttcacactgatagtttccaattgcatcctccatgatggttcatattgttggttggtggaaatc |
272 |
Q |
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| T |
28359093 |
cttatatgctttggtgtttgcatttgagagggtttcacactgatagttcccaattgcatcctccatgatggttcatattgttggttggtggaaatc |
28359188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 54 - 132
Target Start/End: Original strand, 28358971 - 28359049
Alignment:
| Q |
54 |
gggaatagtgtttttcaattgcaaataagagagatttaattagacgaagcatgctttggtgcttgctttgattgatttt |
132 |
Q |
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| T |
28358971 |
gggaatagtgtttttcaattgcaaataagagagatttaattagacgaagcatgctttggtgcttgctttgattgatttt |
28359049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 177 - 272
Target Start/End: Original strand, 3500529 - 3500624
Alignment:
| Q |
177 |
cttatatgctttggtgtttgcatttgagagggtttcacactgatagtttccaattgcatcctccatgatggttcatattgttggttggtggaaatc |
272 |
Q |
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| T |
3500529 |
cttatatgctttggtgtttgcatttgagaaggtttcacactgatagttcgcaattgcatcctccatgatagttcatattgttggttggtggaaatc |
3500624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 54 - 132
Target Start/End: Original strand, 3500408 - 3500486
Alignment:
| Q |
54 |
gggaatagtgtttttcaattgcaaataagagagatttaattagacgaagcatgctttggtgcttgctttgattgatttt |
132 |
Q |
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| T |
3500408 |
gggaatagtgtttttcaattgcaaataagagagatttaattagacgaagcatgttttggtgcttgctttgattgatttt |
3500486 |
T |
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