View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18317_low_85 (Length: 279)
Name: NF18317_low_85
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_low_85 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 6274891 - 6274625
Alignment:
| Q |
1 |
catttccacattagctcagagttatgaatttgagagacattatattgttttacgttttataaaatggcttgcgagctgtgaatacggctaattatctgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6274891 |
catttccacattagctcagagttatgaatttgagagacattatattgttttacgttttataaaatggcttgcgagctgtgaatacgactaattatctgtt |
6274792 |
T |
|
| Q |
101 |
taagaccttaagcttttgtgcatgctaatggcttgtttctgggataacggggaaatgattctgatatctgaacttgtttcttttatccttttatcgatta |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||| |||||||||| |
|
|
| T |
6274791 |
taagactttaagcttttgtgcatgctaatggcttgtttctgggataacggggacatgattctgacacctgaacttgtttcttttatcctgttatcgatta |
6274692 |
T |
|
| Q |
201 |
ggtcaaaatagaccatttacctttaaatttctctcaatggtttgatccgtagttttattttgtcttc |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6274691 |
ggtcaaaatagaccatttacctttaaatttctctcaatggtttgatccgtagttttattttgtcttc |
6274625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 9822599 - 9822870
Alignment:
| Q |
1 |
catttccacattagctcagagttatgaatttgagagacattatattgttttacgttttataaaatggcttgcgagctgtgaatacggctaattatctgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
9822599 |
catttccacattagctcagagttatgaatttgagagacattatattgttttacgttttataaaatggcttgcgagctgtgaatacggcgaattatctgtt |
9822698 |
T |
|
| Q |
101 |
taagaccttaagcttttgtgcatgctaatggcttgtttctgggataacggggaaatgattctgatatctgaacttgtttcttttatccttttatcgatta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
9822699 |
taagaccttaagcttttgtgcatgctaatggcttgtttctgggataacggggaaatgattctgatatctgaacttgtttcttttatcctgttatcgatta |
9822798 |
T |
|
| Q |
201 |
ggtcaa-----aatagaccatttacctttaaatttctctcaatggtttgatccgtagttttattttgtcttc |
267 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9822799 |
ggtcaagaaacgatagaccatttacctttaaatttctctcaatggtttgatccgtagttttattttgtcttc |
9822870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 9823242 - 9823503
Alignment:
| Q |
1 |
catttccacattagctcaga-gttatgaatttgagagacattatattgttttacgttttataaaatggcttgcgagctgtgaatacggctaattatctgt |
99 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||| |||| |||||| |||||||||||||| | |
|
|
| T |
9823242 |
catttctacattagctcagaagttatgaatttcagagacattatattgttttacactttataaaatggcttacgagttgtgaagacggctaattatcttt |
9823341 |
T |
|
| Q |
100 |
ttaagaccttaagcttttgtgcatgctaatggcttgtttctgggataacggggaaatgattctgatatctgaacttgtttcttttatccttttatcgatt |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||| ||| |
|
|
| T |
9823342 |
ttaagaccttaagcttttgtgcatgctaatgacttgtttctgggataatggggaaatgattctgatatctg-----ttttcttttatcctgttatcaatt |
9823436 |
T |
|
| Q |
200 |
aggtcaaaatagaccatttacctttaaatttctctcaatggtttgatccgtagttttattttgtctt |
266 |
Q |
| |
|
|| |||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
9823437 |
agatcaagatagaccatttacctttaaatttctctcaatggtttgacccgtagttttcttttgtctt |
9823503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 6273606 - 6273347
Alignment:
| Q |
1 |
catttccacattagctcaga-gttatgaatttgagagacattatat----tgttttacgttttataaaatggcttgcgagctgtgaatacggctaattat |
95 |
Q |
| |
|
|||||| ||||||||||||| ||||| |||| ||||||||||||| |||||||| ||||||||||||||| ||| ||||||||||| ||||||| |
|
|
| T |
6273606 |
catttctacattagctcagaagttat--atttcagagacattatatatattgttttacactttataaaatggcttatgagttgtgaatacggataattat |
6273509 |
T |
|
| Q |
96 |
ctgtttaagaccttaagcttttgtgcatgctaatggcttgtttctgggataacggggaaatgattctgatatctgaacttgtttcttttatccttttatc |
195 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
6273508 |
ctttttaagaccttaagcttttgtgcatgctaatgacttgtttctgggataacggggaaatgattctgatatctg-----ttttcttttatcctgttatc |
6273414 |
T |
|
| Q |
196 |
gattaggtcaaaatagaccatttacctttaaatttctctcaatggtttgatccgtagttttattttg |
262 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6273413 |
aattaggtcaagatagaccatttacctttaaatttctctcaatggtttgatccgtagttttcttttg |
6273347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 6274248 - 6273983
Alignment:
| Q |
1 |
catttccacattagctcaga-gttatgaatttgagagacattatat----tgttttacgttttataaaatggcttgcgagctgtgaatacggctaattat |
95 |
Q |
| |
|
|||||| ||||||||||||| ||||| |||| ||||||||||||| |||||||| ||||||||||||||| ||| ||||||||||| ||||||| |
|
|
| T |
6274248 |
catttctacattagctcagaagttat--atttcagagacattatatatattgttttacactttataaaatggcttatgagttgtgaatacggataattat |
6274151 |
T |
|
| Q |
96 |
ctgtttaagaccttaagcttttgtgcatgctaatggcttgtttctgggataacggggaaatgattctgatatctgaacttgtttcttttatccttttatc |
195 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
6274150 |
ctttttaagaccttaagcttttgtgcatgctaatgacttgtttctgggataaccaggaaatgattctgatatctg-----ttttcttttatcctgttatc |
6274056 |
T |
|
| Q |
196 |
gattaggtcaaaatagaccatttacctttaaatttctctcaatgg-tttgatccgtagttttattttgtcttc |
267 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
6274055 |
aattaggtcaagatagaccatttacctttaaatttctctcaatggttttgctccgtagttttattttgtcttc |
6273983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 35679682 - 35679917
Alignment:
| Q |
1 |
catttccacattagctcaga-gttatgaatttgagagacattatattgttttacgttttataaaatggcttg--cgagctgtgaatacggctaattatct |
97 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||| |||| |||||| |||||||||| | |
|
|
| T |
35679682 |
catttctacattagctcagacgttatgaatttcagagacattatattgttttacactttataaaatggcttttacgagtggtgaatttggctaattatat |
35679781 |
T |
|
| Q |
98 |
gtttaagaccttaagcttttgtgcatgctaatggcttgtttctgggataacggggaaatgattctgatatctgaacttgtttcttttatccttttatcga |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||| |||||||||| ||||||||||||||| ||||| | |
|
|
| T |
35679782 |
gtttaagaccttaagcttttgtgcatgctaatggcatgtttctgggataacagggaaaatattctaatatctgaacgtgtttcttttatcctgttatcta |
35679881 |
T |
|
| Q |
198 |
ttagg-tcaaaatagaccatttacctttaaatttct |
232 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
35679882 |
ttaggatcaagatagaccatttacctttaaatttct |
35679917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 245
Target Start/End: Complemental strand, 25486820 - 25486787
Alignment:
| Q |
212 |
accatttacctttaaatttctctcaatggtttga |
245 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |
|
|
| T |
25486820 |
accatttacctttaaatttctctcattggtttga |
25486787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University