View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18317_low_91 (Length: 263)
Name: NF18317_low_91
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_low_91 |
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| [»] scaffold0134 (1 HSPs) |
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| [»] scaffold0129 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 29417396 - 29417647
Alignment:
| Q |
1 |
aaccagataaagagttccatggacactacctgaatctaaaagcctaaaaccagaatcatatttggcttgacccagatatgccggcgctattttgatattc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
29417396 |
aaccagataaagagttccatggacactacctgaatctaaaagcctaaaaccagaatcatatctggcttgacctagatatgccggcgctattttgatattc |
29417495 |
T |
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| Q |
101 |
ggccaatctaatttgaccttattctcaaacctcaaaccggaaacagcatacaactcaaatgtttcttcgtaaggatgacagccataagaaggacaaaatg |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
29417496 |
ggccaatctaatttgaccttattctcaaacctcgaaccggaaacagaatacaactcaaatgtttcttcgaaaggatgacagccataagaaggacaaaatg |
29417595 |
T |
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| Q |
201 |
tttggtgtaggaggagggaggtattatcataataagaatgatcctttgttac |
252 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
29417596 |
tttggtgtaggaggagagaggtattatcataataagaatgatcctttgttac |
29417647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 24654979 - 24654801
Alignment:
| Q |
1 |
aaccagataaagagttccatggacactacctgaatctaaaagcctaaaaccagaatcatatttggcttgacccagata---tgccggcgctattttgata |
97 |
Q |
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| T |
24654979 |
aaccatataaagagttccatggacactacctgaacctaaaagcctaaaaccacgctcatatttgactccagccctataatatcccggctttaatttgata |
24654880 |
T |
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| Q |
98 |
ttcggccaatctaatttgaccttattctcaaacctcaaaccggaaacagcatacaactcaaatgtttcttcgtaaggat |
176 |
Q |
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| T |
24654879 |
tttggccaatctaatttgaccttattttcaaaactcgaaccggaaacagaatacaactcaaatgtatcatcgtgaggat |
24654801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 201 - 252
Target Start/End: Complemental strand, 24654761 - 24654710
Alignment:
| Q |
201 |
tttggtgtaggaggagggaggtattatcataataagaatgatcctttgttac |
252 |
Q |
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| T |
24654761 |
tttggtgtaggaggagagaggtatcatcataataagaatgatcctttgttac |
24654710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 101 - 251
Target Start/End: Original strand, 16487405 - 16487552
Alignment:
| Q |
101 |
ggccaatctaatttgaccttattctcaaacctcaaaccggaaacagcatacaactcaaatgtttcttcgtaaggatgacagccataagaaggacaaaatg |
200 |
Q |
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| T |
16487405 |
ggccaatctaatttgatcctattctcaaacctcttaccagcaagagaatacaaatcaaatgtttcatcgt---gataataaccctcaaaaggagaaaatg |
16487501 |
T |
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| Q |
201 |
tttggtgtaggaggagggaggtattatcataataagaatgatcctttgtta |
251 |
Q |
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|||| ||||| || | || |||| || ||||||||||||||||||||||| |
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| T |
16487502 |
tttgatgtagtagaaaagacgtatcatgataataagaatgatcctttgtta |
16487552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 130
Target Start/End: Original strand, 48742658 - 48742687
Alignment:
| Q |
101 |
ggccaatctaatttgaccttattctcaaac |
130 |
Q |
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| T |
48742658 |
ggccaatctaatttgaccttattctcaaac |
48742687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0134 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0134
Description:
Target: scaffold0134; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 133
Target Start/End: Original strand, 16972 - 17000
Alignment:
| Q |
105 |
aatctaatttgaccttattctcaaacctc |
133 |
Q |
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| T |
16972 |
aatctaatttgaccttattctcaaacctc |
17000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 133
Target Start/End: Original strand, 17836 - 17868
Alignment:
| Q |
101 |
ggccaatctaatttgaccttattctcaaacctc |
133 |
Q |
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| T |
17836 |
ggccaatttaatttgaccttattctcaaacctc |
17868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 133
Target Start/End: Original strand, 34232 - 34264
Alignment:
| Q |
101 |
ggccaatctaatttgaccttattctcaaacctc |
133 |
Q |
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| T |
34232 |
ggccaatcaaatttgaccttattctcaaacctc |
34264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 133
Target Start/End: Complemental strand, 34287822 - 34287790
Alignment:
| Q |
101 |
ggccaatctaatttgaccttattctcaaacctc |
133 |
Q |
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||||||||||||||||||||||| ||||||||| |
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| T |
34287822 |
ggccaatctaatttgaccttattatcaaacctc |
34287790 |
T |
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