View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18317_low_93 (Length: 260)
Name: NF18317_low_93
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_low_93 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 23993607 - 23993552
Alignment:
| Q |
1 |
cagagaaaagctgaggtaatgtttatggtgttgagagttactgacttgaaagctta |
56 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23993607 |
cagagaaaagctgaggtaatgtttatggtgttgagagttactgacttgaaagctta |
23993552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 25661504 - 25661559
Alignment:
| Q |
1 |
cagagaaaagctgaggtaatgtttatggtgttgagagttactgacttgaaagctta |
56 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
25661504 |
cagagaaaagctgaggtaacgtttatggtgttgagagttactgacttgaaagctta |
25661559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 7769620 - 7769565
Alignment:
| Q |
1 |
cagagaaaagctgaggtaatgtttatggtgttgagagttactgacttgaaagctta |
56 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
7769620 |
cagagaaaagttgaggtaatgtttatggtgttgagagttactgacttgaaggctta |
7769565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University