View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18317_low_97 (Length: 251)

Name: NF18317_low_97
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18317_low_97
NF18317_low_97
[»] chr8 (1 HSPs)
chr8 (10-153)||(24422853-24422996)
[»] chr7 (1 HSPs)
chr7 (10-91)||(49170758-49170840)
[»] chr1 (1 HSPs)
chr1 (22-91)||(8421274-8421343)
[»] chr3 (1 HSPs)
chr3 (73-153)||(40889025-40889106)
[»] chr2 (2 HSPs)
chr2 (23-91)||(36732707-36732784)
chr2 (15-97)||(1193369-1193450)


Alignment Details
Target: chr8 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 10 - 153
Target Start/End: Complemental strand, 24422996 - 24422853
Alignment:
Q  10 attattctaggattagagattgaagtatggaagtaaacaagataaaaaggacatagagtgtaccttagacttccatgaatttaaagaaaagtggttgcta 109  Q
    |||||||||||||||||||||| | ||||| ||||| ||||||| |||||||||||||| ||||||||||| ||| |||||| | |||||||||||||||    
T  24422996 attattctaggattagagattggaatatgggagtaagcaagatagaaaggacatagagtataccttagactcccaagaatttcatgaaaagtggttgcta 24422897  T
Q  110 gatgaatacttaagggacttgaaaagtaaattgcatgaacaaga 153  Q
    ||| |||| |||| | ||||  ||||||| ||| ||||||||||    
T  24422896 gatcaataattaaagaacttagaaagtaatttggatgaacaaga 24422853  T

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Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 10 - 91
Target Start/End: Original strand, 49170758 - 49170840
Alignment:
Q  10 attattctaggatt-agagattgaagtatggaagtaaacaagataaaaaggacatagagtgtaccttagacttccatgaattt 91  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  49170758 attattctaggatttagagattgaagtatggaagtaaacaaaataaaaaggacatagagtataccttagacttccatgaattt 49170840  T

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Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 22 - 91
Target Start/End: Complemental strand, 8421343 - 8421274
Alignment:
Q  22 ttagagattgaagtatggaagtaaacaagataaaaaggacatagagtgtaccttagacttccatgaattt 91  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  8421343 ttagagattgaagtatggaagtaaacaaaataaaaaggacatagagtataccttagacttccatgaattt 8421274  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 153
Target Start/End: Original strand, 40889025 - 40889106
Alignment:
Q  73 cttagacttccatgaatttaa-agaaaagtggttgctagatgaatacttaagggacttgaaaagtaaattgcatgaacaaga 153  Q
    ||||| ||||||||||||| | ||||||||||||| ||||||||||||||| |||||   ||||||| ||| ||||||||||    
T  40889025 cttaggcttccatgaattttacagaaaagtggttgatagatgaatacttaaaggactaagaaagtaatttggatgaacaaga 40889106  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 36732707 - 36732784
Alignment:
Q  23 tagagattgaagtatggaagtaaacaagataa---------aaaggacatagagtgtaccttagacttccatgaattt 91  Q
    ||||||||| ||||||||||||||||||||||         |||||||||||||| ||||||||||||||||||||||    
T  36732707 tagagattggagtatggaagtaaacaagataaaaaaaataaaaaggacatagagtataccttagacttccatgaattt 36732784  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 1193450 - 1193369
Alignment:
Q  15 tctaggattagagatt-gaagtatggaagtaaacaagataaaaaggacatagagtgtaccttagacttccatgaatttaaagaa 97  Q
    |||||||||||||||| | || ||||||| |||||||||||| ||||| ||||||  ||||||| ||||||||||||| |||||    
T  1193450 tctaggattagagatttggagcatggaaggaaacaagataaataggacctagagt--accttaggcttccatgaattttaagaa 1193369  T

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