View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18318_high_1 (Length: 1110)

Name: NF18318_high_1
Description: NF18318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18318_high_1
NF18318_high_1
[»] chr6 (15 HSPs)
chr6 (11-571)||(14860558-14861106)
chr6 (259-745)||(18676864-18677349)
chr6 (105-453)||(14858618-14858965)
chr6 (889-1092)||(14861291-14861494)
chr6 (678-865)||(14861104-14861291)
chr6 (68-267)||(18675830-18676028)
chr6 (70-147)||(12351423-12351501)
chr6 (205-290)||(32983722-32983807)
chr6 (973-1017)||(14865640-14865684)
chr6 (201-256)||(24172951-24173006)
chr6 (201-260)||(24557383-24557442)
chr6 (883-920)||(9024176-9024213)
chr6 (194-231)||(12351545-12351582)
chr6 (1057-1092)||(14865685-14865720)
chr6 (980-1092)||(25358731-25358835)
[»] chr3 (10 HSPs)
chr3 (69-487)||(39924770-39925187)
chr3 (59-327)||(5027635-5027901)
chr3 (11-327)||(3276679-3276989)
chr3 (69-327)||(3273321-3273579)
chr3 (616-745)||(3273903-3274032)
chr3 (616-745)||(3277313-3277442)
chr3 (201-278)||(14308930-14309008)
chr3 (473-660)||(34056416-34056595)
chr3 (884-920)||(20691341-20691377)
chr3 (883-920)||(4704292-4704329)
[»] chr5 (3 HSPs)
chr5 (69-487)||(14405148-14405565)
chr5 (71-328)||(40667153-40667411)
chr5 (201-244)||(25942764-25942807)
[»] chr1 (9 HSPs)
chr1 (473-745)||(21197956-21198228)
chr1 (69-327)||(16850483-16850741)
chr1 (616-741)||(16851064-16851189)
chr1 (68-230)||(21197540-21197699)
chr1 (875-920)||(30847712-30847757)
chr1 (883-916)||(7918211-7918244)
chr1 (883-916)||(20157350-20157383)
chr1 (883-916)||(21038109-21038142)
chr1 (883-916)||(25361912-25361945)
[»] scaffold0882 (1 HSPs)
scaffold0882 (68-427)||(893-1243)
[»] scaffold0766 (1 HSPs)
scaffold0766 (68-427)||(2160-2510)
[»] scaffold0031 (1 HSPs)
scaffold0031 (59-413)||(89769-90127)
[»] chr8 (4 HSPs)
chr8 (767-1089)||(35144489-35144812)
chr8 (616-745)||(39038197-39038326)
chr8 (70-327)||(39037622-39037876)
chr8 (194-307)||(37785822-37785935)
[»] scaffold0303 (1 HSPs)
scaffold0303 (11-327)||(20363-20670)
[»] scaffold0047 (1 HSPs)
scaffold0047 (69-307)||(8328-8566)
[»] scaffold0097 (1 HSPs)
scaffold0097 (68-333)||(31847-32107)
[»] scaffold0004 (2 HSPs)
scaffold0004 (11-268)||(113542-113790)
scaffold0004 (69-307)||(354488-354726)
[»] chr2 (13 HSPs)
chr2 (194-333)||(20728018-20728157)
chr2 (551-660)||(25416977-25417080)
chr2 (69-148)||(26794805-26794884)
chr2 (266-327)||(24779619-24779680)
chr2 (169-236)||(2997092-2997157)
chr2 (878-920)||(18570994-18571036)
chr2 (195-235)||(24779570-24779610)
chr2 (206-277)||(21546631-21546703)
chr2 (884-920)||(37402085-37402121)
chr2 (194-244)||(4183083-4183133)
chr2 (890-920)||(4229415-4229445)
chr2 (878-916)||(31808103-31808141)
chr2 (878-916)||(34993977-34994015)
[»] chr7 (10 HSPs)
chr7 (68-146)||(18070075-18070153)
chr7 (11-290)||(8595388-8595656)
chr7 (187-307)||(18069888-18070008)
chr7 (74-127)||(15889623-15889676)
chr7 (206-290)||(8826295-8826379)
chr7 (190-264)||(1907764-1907838)
chr7 (24-102)||(8826116-8826188)
chr7 (878-916)||(4909177-4909215)
chr7 (883-916)||(18013074-18013107)
chr7 (877-914)||(18226972-18227009)
[»] scaffold1744 (1 HSPs)
scaffold1744 (193-268)||(1098-1172)
[»] chr4 (2 HSPs)
chr4 (169-236)||(17983348-17983413)
chr4 (885-920)||(18513243-18513278)
[»] scaffold0049 (1 HSPs)
scaffold0049 (883-920)||(56944-56981)


Alignment Details
Target: chr6 (Bit Score: 498; Significance: 0; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 11 - 571
Target Start/End: Original strand, 14860558 - 14861106
Alignment:
Q  11 catcatcaaaaagggggagaatgtgaatatatgctttgacaggatacgggatacggcggttttgatgattgacaaaagaagtcctagaagaacaacgaag 110  Q
    |||||||||||||||||||||||||||||||||| ||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14860558 catcatcaaaaagggggagaatgtgaatatatgccttga-----tacgggatacggcggttttgatgattgacaaaagaagtcctagaagaacaacgaag 14860652  T
Q  111 caaaaagcggaaaagaaattcaagctatcaagtcttgagtcttgagnnnnnnngtttatattaggactttattgtaagtggttaaaaagctctcatgaaa 210  Q
    |||||||||||||||||||||||||||||||||||||||| ||          |||||||||||||||||||||||||||||||||||||||||||||||    
T  14860653 caaaaagcggaaaagaaattcaagctatcaagtcttgagtttt-------tttgtttatattaggactttattgtaagtggttaaaaagctctcatgaaa 14860745  T
Q  211 ataaatcacacactcacaatgattttcatctaaagtaattttacatgaaaatatttttacatgaaaagtcataatttattttacaaattgcataattggt 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14860746 ataaatcacacactcacaatgattttcatctaaagtaattttacatgaaaatatttttacatgaaaagtcataatttattttacaaattgcataattggt 14860845  T
Q  311 tttgacattgaaaatatatttgagcttgatgttaatcatttcgtaaatcaaattatcatggttttgacttttgcatacaaatattttcattacataattg 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14860846 tttgacattgaaaatatatttgagcttgatgttaatcatttcgtaaatcaaattatcatggttttgacttttgcatacaaatattttcattacataattg 14860945  T
Q  411 attatgtgattctcaaattggcctaattatttcaatgctatattctgcattcatgatattttcttttctatccgttgccaattaaacatgtaatcgttgg 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14860946 attatgtgattctcaaattggcctaattatttcaatgctatattctgcattcatgatattttcttttctatccgttgccaattaaacatgtaatcgttgg 14861045  T
Q  511 aatgaaatcaagtttttaataccatgcaattgaatggatttgattcttaaaaagattacat 571  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14861046 aatgaaatcaagtttttaataccatgcaattgaatggatttgattcttaaaaagattacat 14861106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 259 - 745
Target Start/End: Original strand, 18676864 - 18677349
Alignment:
Q  259 aaatatttttacatgaaaagtcataatttattttacaaattgcataattggttttgacattgaaaatatatttgagcttgatgttaatcatttcgtaaat 358  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  18676864 aaatatttttacatgaaaagtcataatttattttacaaattgcataattggttttgacattgaaaatatatttgagcttgatattaatcatttcgtaaat 18676963  T
Q  359 caaattatcatggttttgacttttgcatacaaatattttcattacataattgattatgtgattctcaaattggcctaattatttcaatgctatattctgc 458  Q
    |||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  18676964 caaaatatcatggctttgacttttgcatgcaaatattttcattacataattgattatgtgattttcaaattggcctaattatttcaatgctatattctgc 18677063  T
Q  459 attcatgatattttcttttctatccgttgccaattaaacatgtaatcgttggaatgaaatcaagtttttaataccatgcaattgaatggatttgattctt 558  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  18677064 attcatgatattttcttttctatccgttggcaattaaacatgtaatcgttggaatgaaatcaagtttttattaccatgcaattgaatggatttgattctt 18677163  T
Q  559 aaaaagattacatattgcctaattggtctatatgtattcaacgactaattttgtatgtccaacggctacttgattttatcatgctacagctagttatttt 658  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||    
T  18677164 aaaaa-attacatattgcctaattggtctatatgtattcaacggctaattttaaatgtccaacggctacttgattttatcatgctacggctagttatttt 18677262  T
Q  659 ctcatatgaatttcattctcatttttgcatataaatagattctgtgtggtagctcatttgtaacaactcatatttgcactaaacatt 745  Q
    |||| ||||||||||||||||||||| ||||||||||||| || |||||||||||||||  ||||||||||||||||||||||||||    
T  18677263 ctcaaatgaatttcattctcatttttacatataaatagatgctttgtggtagctcatttaaaacaactcatatttgcactaaacatt 18677349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 105 - 453
Target Start/End: Original strand, 14858618 - 14858965
Alignment:
Q  105 acgaagcaaaaagcggaaaagaaattcaagctatcaagtcttgagtcttgagnnnnnnngtttatattaggactttattgtaagtggttaaaaagctctc 204  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||    
T  14858618 acgatgcaaaaagcggaaaagaaattcaagctatcaagtcttgagtcttgagttttttc-tttatattaggactttattgtaagtggttaaaaagctctc 14858716  T
Q  205 atgaaaataaatcacacactcacaatgattttcatctaaagtaattttacatgaaaatatttttacatgaaaagtcataatttattttacaaattgcata 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14858717 atgaaaataaatcacacactcacaatgattttcatctaaagtaattttacatgaaaatatttttacatgaaaagtcataatttattttacaaattgcata 14858816  T
Q  305 attggttttgacattgaaaatatatttgagcttgatgttaatcatttcgtaaatcaaattatcatggttttgacttttgcatacaaatattttcattaca 404  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14858817 attgattttgacattgaaaatatatttgagcttgatgttaatcatttcgtaaatcaaattatcatggttttgacttttgcatacaaatattttcattaca 14858916  T
Q  405 taattgattatgtgattctcaaattggcctaattatttcaatgctatat 453  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14858917 taattgattatgtgattctcaaattggcctaattatttcaatgctatat 14858965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 889 - 1092
Target Start/End: Original strand, 14861291 - 14861494
Alignment:
Q  889 tgacacatatgattacactgaattatgtcattattggtgtctgcatttcgttgtttgtgtcatgtctgatgtctgtgtttatgtttcatagaataaaagt 988  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  14861291 tgacacatatgattacactgaattatgtcattatcggtgtctgcatttcgttgtttgtgtcatgtctggtgtctgtgtttatgtttcatagaataaaagt 14861390  T
Q  989 gccatacaagactataatatctcatccatttttcaacattctcatgtctcaacattttgtatctcgaactaaactcaatgaaatccaaatctaaagttgt 1088  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  14861391 gccatacaagactataatatctcatccatttttcaacattctcatgtctcaacattttgtatctccaactaaactcaatgaaatccaaatctaaagttgt 14861490  T
Q  1089 tcct 1092  Q
    ||||    
T  14861491 tcct 14861494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 163; E-Value: 2e-86
Query Start/End: Original strand, 678 - 865
Target Start/End: Original strand, 14861104 - 14861291
Alignment:
Q  678 catttttgcatataaatagattctgtgtggtagctcatttgtaacaactcatatttgcactaaacattatcnnnnnnntttttggtcgtttttcttgagt 777  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  14861104 catttttgcatataaatagattctgtgtggtagctcatttgtaacaactcatatttgcactaaacattatcaaaaatatttttggtcgtttttcttgagt 14861203  T
Q  778 gatttagagtcctaaatcacccaccgattcacacacccacaccgaaaattaagacctacgaagcaagggcactcctcgaattatgtgt 865  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  14861204 gatttagagtcctaaatcacccaccgattcacacacccacaccgaaaattaagacctacgaagcaaggacactcctcgaattatgtgt 14861291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 158; E-Value: 2e-83
Query Start/End: Original strand, 68 - 267
Target Start/End: Original strand, 18675830 - 18676028
Alignment:
Q  68 ggttttgatgattgacaaaagaagtcctagaagaacaacgaagcaaaaagcggaaaagaaattcaagctatcaagtcttgagtcttgagnnnnnnngttt 167  Q
    |||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||       ||||    
T  18675830 ggttttgatgatggacaaaagaagtcctagaagagcaacgatgcaaaaagcggaaaagaaattcaagctatcaaatcttgagtcttgagtttttt-gttt 18675928  T
Q  168 atattaggactttattgtaagtggttaaaaagctctcatgaaaataaatcacacactcacaatgattttcatctaaagtaattttacatgaaaatatttt 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18675929 atattaggactttattgtaagtggttaaaaagctctcatgaaaataaatcacacactcacaatgattttcatctaaagtaattttacatgaaaatatttt 18676028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 70 - 147
Target Start/End: Original strand, 12351423 - 12351501
Alignment:
Q  70 ttttgatgattgacaaaagaagtcctagaagaacaacgaagcaaaaagcggaaaagaa-attcaagctatcaagtcttg 147  Q
    |||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||| ||||| ||||||||||    
T  12351423 ttttgatgattgacaaaagaagtcctagaagaacaaagatgcaaaaagcggaaaagaagatttaagctttcaagtcttg 12351501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 205 - 290
Target Start/End: Original strand, 32983722 - 32983807
Alignment:
Q  205 atgaaaataaatcacacactcacaatgattttcatctaaagtaattttacatgaaaatatttttacatgaaaagtcataatttatt 290  Q
    ||||||| |||||||||||||||| |||||||||| || ||| ||||||||| ||| ||||||| ||||||||  |||||||||||    
T  32983722 atgaaaagaaatcacacactcacattgattttcatatatagtgattttacattaaattatttttccatgaaaacccataatttatt 32983807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 973 - 1017
Target Start/End: Original strand, 14865640 - 14865684
Alignment:
Q  973 ttcatagaataaaagtgccatacaagactataatatctcatccat 1017  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  14865640 ttcatagaataaaagtgccatacaagactataatatctcatccat 14865684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 201 - 256
Target Start/End: Original strand, 24172951 - 24173006
Alignment:
Q  201 tctcatgaaaataaatcacacactcacaatgattttcatctaaagtaattttacat 256  Q
    |||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  24172951 tctcattaaaataaatcacacactcacaataattttcatctcaagtaattttacat 24173006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 201 - 260
Target Start/End: Complemental strand, 24557442 - 24557383
Alignment:
Q  201 tctcatgaaaataaatcacacactcacaatgattttcatctaaagtaattttacatgaaa 260  Q
    |||||| ||||||||||||||||||||| |||||||||  || |||||||||||||||||    
T  24557442 tctcattaaaataaatcacacactcacattgattttcacatatagtaattttacatgaaa 24557383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 883 - 920
Target Start/End: Original strand, 9024176 - 9024213
Alignment:
Q  883 cgacactgacacatatgattacactgaattatgtcatt 920  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  9024176 cgacactgacacatatgattacattgaattatgtcatt 9024213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 12351545 - 12351582
Alignment:
Q  194 aaaaagctctcatgaaaataaatcacacactcacaatg 231  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  12351545 aaaaagctctcatgaaaataaatcacacattcacaatg 12351582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1057 - 1092
Target Start/End: Original strand, 14865685 - 14865720
Alignment:
Q  1057 ctaaactcaatgaaatccaaatctaaagttgttcct 1092  Q
    |||||||||||||||||||||| |||||||||||||    
T  14865685 ctaaactcaatgaaatccaaatgtaaagttgttcct 14865720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 980 - 1092
Target Start/End: Original strand, 25358731 - 25358835
Alignment:
Q  980 aataaaagtgccatacaagactataatatctcatccatttttcaacattctcatgtctcaacattttgtatctcgaactaaactcaatgaaatccaaatc 1079  Q
    |||||||||| | ||||||||||||||||||||| ||| |||||||        || ||||||||||||| ||     || ||||||| |||||||||||    
T  25358731 aataaaagtgtcgtacaagactataatatctcattcatctttcaac--------gtttcaacattttgtaacttctgttacactcaattaaatccaaatc 25358822  T
Q  1080 taaagttgttcct 1092  Q
    |||||||||||||    
T  25358823 taaagttgttcct 25358835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 69 - 487
Target Start/End: Original strand, 39924770 - 39925187
Alignment:
Q  69 gttttgatgattgacaaaagaagtcctagaagaacaacgaagcaaaaagcggaaaagaa-attcaagctatcaagtcttgagtcttgagnnnnnnngttt 167  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||| ||||||||||  | || |         |||    
T  39924770 gttttgatgattgacaaaagaagtcctagaagaacaaagatgcaaaaagcggaaaagaagattcaagctttcaagtcttggattttaatttta----ttt 39924865  T
Q  168 atattaggactttattgtaagtggtt-aaaaagctctcatgaaaataaatcacacactcacaatgattttcatctaaa-gtaattttacatgaaaatatt 265  Q
     | ||||||||   ||||| || ||  |||||| |||||| |||||||||||||||||||||||| ||||||| || | || ||||||||| ||| ||||    
T  39924866 gttttaggactgatttgtacgtagtagaaaaagttctcattaaaataaatcacacactcacaatggttttcatttatatgtgattttacataaaattatt 39924965  T
Q  266 tttacatgaaaagtcataatttattttacaaattgcataattggttttgacattgaaaatatatttgagcttgatgttaatcatttcgtaaatcaaatta 365  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||    
T  39924966 tttacataaaaagtcataatttattttacaaattgcataattggttttgacattgaaaatatatttgagcttgattttaattattacgtaaatcaaatta 39925065  T
Q  366 tcatggttttgacttttgcatacaaatattttcattacataattgattatgtgattctcaaattggcctaattatttcaatgctatattctgcattcatg 465  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39925066 tcatggctttgacttttgcatacaaatattttcattacataattgattatgtgattctcaaattggcctaattatttcaatgctatattctgcattcatg 39925165  T
Q  466 atattttcttttctatccgttg 487  Q
    |||||||||||| |||||||||    
T  39925166 atattttcttttgtatccgttg 39925187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 59 - 327
Target Start/End: Complemental strand, 5027901 - 5027635
Alignment:
Q  59 ggatacggcggttttgatgattgacaaaagaagtcctagaagaacaacgaagcaaaaagcggaaaagaa-attcaagctatcaagtcttgagtcttgagn 157  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| || |||||||| | || |      
T  5027901 ggatacgatggttttgatgattgacaaaagaagtcctagaagaacaacgatgcaaaaagcggaaaagaatattcaagctttctagtcttgaattttaatt 5027802  T
Q  158 nnnnnngtttatattaggactttattgtaagtggtta-aaaagctctcatgaaaataaatcacacactcacaatgattttcatctaaa-gtaattttaca 255  Q
           ||| |||||||||||||| |||||| ||   ||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||| ||    
T  5027801 tta----tttgtattaggactttat-gtaagtagtaccaaaagctctcatgaaaataaatcacacactcacaatgattttcatttaaatgtgattttgca 5027707  T
Q  256 tgaaaatatttttacatgaaaagtcataatttattttacaaattgcataattggttttgacattgaaaatat 327  Q
    | |||||||||||||||||||| | |||||||||||||||||||||||||||  |||||||||| |||||||    
T  5027706 ttaaaatatttttacatgaaaacttataatttattttacaaattgcataattctttttgacattaaaaatat 5027635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 11 - 327
Target Start/End: Original strand, 3276679 - 3276989
Alignment:
Q  11 catcatcaaaaagggggagaatgtgaatatatgctttgacaggatacgggatacggcggttttgatgattgacaaaagaagtcctagaagaacaacgaag 110  Q
    |||||||||||||||||||||||||||||||||| |||||||||      ||||    ||||||||||||||||||||||||||||||||| |||| | |    
T  3276679 catcatcaaaaagggggagaatgtgaatatatgccttgacagga------atacattagttttgatgattgacaaaagaagtcctagaagagcaacaatg 3276772  T
Q  111 caaaaagcggaaaagaaattcaagctatcaagtcttgagtcttgagnnnnnnngtttatattaggactttattgtaagtggttaaaaa-gctctcatgaa 209  Q
    |||||||||||||||||||||||| |||||||||||| || ||           | | | |||||||||||||||||||||||||||| ||||||| |||    
T  3276773 caaaaagcggaaaagaaattcaagttatcaagtcttgggtttt----atttttatatgtgttaggactttattgtaagtggttaaaaaagctctcaagaa 3276868  T
Q  210 aataaatcacacactcacaatgattttcatctaaag-taattttacatgaaaa-tatttt-tacatgaaaagtcataatttattttacaaattgcataat 306  Q
    ||||||||| ||||||||| |||||||||| ||||  ||||||  |||||||| |||||| ||||||| ||| || ||||||||||  ||||||||||||    
T  3276869 aataaatcatacactcacagtgattttcatttaaatctaatttagcatgaaaactattttttacatgagaagccaaaatttattttgaaaattgcataat 3276968  T
Q  307 tggttttgacattgaaaatat 327  Q
    ||||||||||||| |||||||    
T  3276969 tggttttgacattaaaaatat 3276989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 69 - 327
Target Start/End: Original strand, 3273321 - 3273579
Alignment:
Q  69 gttttgatgattgacaaaagaagtcctagaagaacaacgaagcaaaaagcggaaaagaaattcaagctatcaagtcttgagtcttgagnnnnnnngttta 168  Q
    ||||||||||||||||||||||||||||||| | |||| | |||||||| |||||||||||||||| |||||||||||| || ||           | |     
T  3273321 gttttgatgattgacaaaagaagtcctagaaaagcaacaatgcaaaaagaggaaaagaaattcaagttatcaagtcttgggtttt----atttttatatg 3273416  T
Q  169 tattaggactttattgtaagtggttaaaaa-gctctcatgaaaataaatcacacactcacaatgattttcatctaaag-taattttacatgaaaa-tatt 265  Q
    | |||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||| |||||||||| ||||  ||||||  |||||||| ||||    
T  3273417 tgttaggactttattgtaagtggttaaaaaagctctcaagaaaataaatcatacactcacagtgattttcatttaaatctaatttagcatgaaaactatt 3273516  T
Q  266 tt-tacatgaaaagtcataatttattttacaaattgcataattggttttgacattgaaaatat 327  Q
    || ||||||| ||| || ||||||||||  ||||||||||||||||||||||||| |||||||    
T  3273517 ttttacatgagaagccaaaatttattttgaaaattgcataattggttttgacattaaaaatat 3273579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 616 - 745
Target Start/End: Original strand, 3273903 - 3274032
Alignment:
Q  616 tccaacggctacttgattttatcatgctacagctagttattttctcatatgaatttcattctcatttttgcatataaatagattctgtgtggtagctcat 715  Q
    ||||||||||| |||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||| || ||| |||||||||    
T  3273903 tccaacggctagttgattttatcatgctacggctagttatattctcaaatgaatttcattctcatttttgcatataaatagatgctttgt-gtagctcat 3274001  T
Q  716 tt-gtaacaactcatatttgcactaaacatt 745  Q
    ||   || |||| ||||||||||||||||||    
T  3274002 ttaagaagaactaatatttgcactaaacatt 3274032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 616 - 745
Target Start/End: Original strand, 3277313 - 3277442
Alignment:
Q  616 tccaacggctacttgattttatcatgctacagctagttattttctcatatgaatttcattctcatttttgcatataaatagattctgtgtggtagctcat 715  Q
    ||||||||||| |||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||| || ||| |||||||||    
T  3277313 tccaacggctagttgattttatcatgctacggctagttatattctcaaatgaatttcattctcatttttgcatataaatagatgctttgt-gtagctcat 3277411  T
Q  716 tt-gtaacaactcatatttgcactaaacatt 745  Q
    ||   || |||| ||||||||||||||||||    
T  3277412 ttaagaagaactaatatttgcactaaacatt 3277442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 201 - 278
Target Start/End: Complemental strand, 14309008 - 14308930
Alignment:
Q  201 tctcatgaaaataaatcacacactcacaatgattttcatctaaa-gtaattttacatgaaaatatttttacatgaaaag 278  Q
    |||||||||||||||||||||||||||||||||| |||| |||| || ||||||||| ||||||||||| |||||||||    
T  14309008 tctcatgaaaataaatcacacactcacaatgattatcatttaaatgtgattttacattaaaatatttttgcatgaaaag 14308930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 473 - 660
Target Start/End: Complemental strand, 34056595 - 34056416
Alignment:
Q  473 cttttctatccgttgccaattaaacatgtaatcgttggaatgaaatcaagtttttaataccat-gcaattgaatggatttgattcttaaaaagattacat 571  Q
    ||||||||||||||| ||||||| | ||||  ||||||||| |||| ||||||||| || ||| | |||||||||  |||| ||| ||||| ||||||||    
T  34056595 cttttctatccgttgtcaattaatc-tgtac-cgttggaatcaaatgaagttttta-tatcattggaattgaatgactttgtttcataaaaggattacat 34056499  T
Q  572 attgcctaattggtctatatgtattcaacgactaattttgtatgtccaacggctacttgattttatcatgctacagctagttattttct 660  Q
     |||||| ||||||||||||||||||||   ||||      ||||||||||||||||| |||||||  |||||| ||||||||||||||    
T  34056498 tttgcctgattggtctatatgtattcaattgctaa------atgtccaacggctacttcattttatattgctacggctagttattttct 34056416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 884 - 920
Target Start/End: Complemental strand, 20691377 - 20691341
Alignment:
Q  884 gacactgacacatatgattacactgaattatgtcatt 920  Q
    ||||| |||||||||||||||||||||||||||||||    
T  20691377 gacaccgacacatatgattacactgaattatgtcatt 20691341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 883 - 920
Target Start/End: Original strand, 4704292 - 4704329
Alignment:
Q  883 cgacactgacacatatgattacactgaattatgtcatt 920  Q
    ||||| || |||||||||||||||||||||||||||||    
T  4704292 cgacaatggcacatatgattacactgaattatgtcatt 4704329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 69 - 487
Target Start/End: Complemental strand, 14405565 - 14405148
Alignment:
Q  69 gttttgatgattgacaaaagaagtcctagaagaacaacgaagcaaaaagcggaaaagaa-attcaagctatcaagtcttgagtcttgagnnnnnnngttt 167  Q
    |||||||||||||||||||||| |||||||||||||| ||  ||||||||||||||||| ||||||||| ||||||||||  | || |         |||    
T  14405565 gttttgatgattgacaaaagaaatcctagaagaacaaagatacaaaaagcggaaaagaagattcaagctttcaagtcttggattttaatttta----ttt 14405470  T
Q  168 atattaggactttattgtaagtggtt-aaaaagctctcatgaaaataaatcacacactcacaatgattttcatctaaa-gtaattttacatgaaaatatt 265  Q
     | ||||||||   |||||||| ||  |||||| |||||| |||||||||||||||||||||||| ||||||| || | || ||||||||| ||| ||||    
T  14405469 gttttaggactgatttgtaagtagtagaaaaagttctcattaaaataaatcacacactcacaatggttttcatttatatgtgattttacataaaattatt 14405370  T
Q  266 tttacatgaaaagtcataatttattttacaaattgcataattggttttgacattgaaaatatatttgagcttgatgttaatcatttcgtaaatcaaatta 365  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||    
T  14405369 tttacataaaaagtcataatttattttacaaattgtataattggttttgacattgaaaatatatttgagcttgattttaattattacgtaaatcaaatta 14405270  T
Q  366 tcatggttttgacttttgcatacaaatattttcattacataattgattatgtgattctcaaattggcctaattatttcaatgctatattctgcattcatg 465  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14405269 tcatggctttgacttttgcatacaaatattttcattacataattgattatgtgattctcaaattggcctaattatttcaatgctatattctgcattcatg 14405170  T
Q  466 atattttcttttctatccgttg 487  Q
    |||||||||||| |||||||||    
T  14405169 atattttcttttgtatccgttg 14405148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 71 - 328
Target Start/End: Complemental strand, 40667411 - 40667153
Alignment:
Q  71 tttgatgattgacaaaagaagtcctagaagaacaacgaagcaaaaagcggaaaagaaattcaagctatcaagtcttgagtcttgagnnnnnnngtttata 170  Q
    ||||| ||| |||||||||| |  || |||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||        ||||||    
T  40667411 tttgacgatggacaaaagaaattttaaaagaacaatgatgcaaaaagtggaaaagaaattcaagctatcaagtcttgagtcttgagtttttttatttata 40667312  T
Q  171 ttaggactttattgtaagtggttaaaaagctctcatgaaaataaatcacacactcacaatgattttcatctaaa-gtaattttacatgaaaatattttta 269  Q
    ||||||||||||| ||||||| ||||||||||||  |||||||||||||||||||||||| |||||||| |||| || ||||| ||| ||||||||||||    
T  40667311 ttaggactttattataagtggataaaaagctctcgagaaaataaatcacacactcacaataattttcatttaaatgtgattttgcataaaaatattttta 40667212  T
Q  270 catgaaaagtcataatttattttacaaattgcataattggttttgacattgaaaatata 328  Q
    ||| |||||||| |||||||||||||||||||||||||| |||||||||| ||||||||    
T  40667211 cataaaaagtcagaatttattttacaaattgcataattgattttgacattaaaaatata 40667153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 244
Target Start/End: Original strand, 25942764 - 25942807
Alignment:
Q  201 tctcatgaaaataaatcacacactcacaatgattttcatctaaa 244  Q
    ||||||||||||||||||||||| || |||||||||||| ||||    
T  25942764 tctcatgaaaataaatcacacacccataatgattttcatataaa 25942807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 473 - 745
Target Start/End: Original strand, 21197956 - 21198228
Alignment:
Q  473 cttttctatccgttgccaattaaacatgtaatcgttggaatgaaatcaagtttttaataccatgcaattgaatggatttgattcttaaaaagattacata 572  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21197956 cttttctatccgttggcaattaaacatataatcgttggaatgaaatcaagtttttaataccatgcaattgaatggatttgattcttaaaaagattacata 21198055  T
Q  573 ttgcctaattggtctatatgtattcaacgactaattttgtatgtccaacggctacttgattttatcatgctacagctagttattttctcatatgaatttc 672  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  21198056 ttgcctaattggtctatatgtattcaacggataattttgtatgtccaacggctacttgattttatcatgctacggctacttattttctcatatgaatttc 21198155  T
Q  673 attctcatttttgcatataaatagattctgtgtggtagctcatttgtaacaactcatatttgcactaaacatt 745  Q
    | | |||||||||||||||||||||| |  |||||||||||||||  ||||||||||||||||||||||||||    
T  21198156 actttcatttttgcatataaatagatgcattgtggtagctcattttcaacaactcatatttgcactaaacatt 21198228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 7e-49
Query Start/End: Original strand, 69 - 327
Target Start/End: Original strand, 16850483 - 16850741
Alignment:
Q  69 gttttgatgattgacaaaagaagtcctagaagaacaacgaagcaaaaagcggaaaagaaattcaagctatcaagtcttgagtcttgagnnnnnnngttta 168  Q
    ||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||| |||||||||||| || ||           | |     
T  16850483 gttttgatgattgacaaaagaagtcctagaagagcaacaatgcaaaaagcggaaaagaaattcaagttatcaagtcttgggtttt----atttttatatg 16850578  T
Q  169 tattaggactttattgtaagtggttaaaaa-gctctcatgaaaataaatcacacactcacaatgattttcatctaaag-taattttacatgaaaa-tatt 265  Q
    | |||||||||||||||||||||||||||| ||||||| |||||||||||| |||||| || |||||||||| ||||  ||||||  |||||||| ||||    
T  16850579 tgttaggactttattgtaagtggttaaaaaagctctcaagaaaataaatcatacactcccagtgattttcatttaaatctaatttagcatgaaaactatt 16850678  T
Q  266 tt-tacatgaaaagtcataatttattttacaaattgcataattggttttgacattgaaaatat 327  Q
    || ||||||| ||| || ||||||||||  ||||||||||||||||||||||||| |||||||    
T  16850679 ttttacatgagaagccaaaatttattttgaaaattgcataattggttttgacattaaaaatat 16850741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 616 - 741
Target Start/End: Original strand, 16851064 - 16851189
Alignment:
Q  616 tccaacggctacttgattttatcatgctacagctagttattttctcatatgaatttcattctcatttttgcatataaatagattctgtgtggtagctcat 715  Q
    ||||||||||| |||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||| || ||| |||||||||    
T  16851064 tccaacggctagttgattttatcatgctacggctagttatattctcaaatgaatttcattctcatttttgcatataaatagatgctttgt-gtagctcat 16851162  T
Q  716 tt-gtaacaactcatatttgcactaaa 741  Q
    ||   || |||| ||||||||||||||    
T  16851163 ttaagaagaactaatatttgcactaaa 16851189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 68 - 230
Target Start/End: Original strand, 21197540 - 21197699
Alignment:
Q  68 ggttttgatgattgacaaaagaagtcctagaagaacaacgaagcaaaaagcggaaaagaa-attcaagctatcaagtcttgagtcttgagnnnnnnngtt 166  Q
    |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||| ||  ||||||  | ||           ||    
T  21197540 ggttttgatgattgacaaaagaagtcctagaagaacaaagatgcaaaaagcggaaaagaatattcaagctttcttgtcttggatttt----atttttatt 21197635  T
Q  167 tatattaggactttattgtaagtggttaaaaagctctcatgaaaataaatcacacactcacaat 230  Q
    ||||||| || ||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  21197636 tatattacgaatttattgtaagtggttaaaaatctctcaagaaaataaatcacacactcacaat 21197699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 875 - 920
Target Start/End: Original strand, 30847712 - 30847757
Alignment:
Q  875 tcggtgttcgacactgacacatatgattacactgaattatgtcatt 920  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||    
T  30847712 tcggtgttcaacactgacacatatgattacattgaattatgtcatt 30847757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 883 - 916
Target Start/End: Original strand, 7918211 - 7918244
Alignment:
Q  883 cgacactgacacatatgattacactgaattatgt 916  Q
    |||||||||||||||| |||||||||||||||||    
T  7918211 cgacactgacacatataattacactgaattatgt 7918244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 883 - 916
Target Start/End: Original strand, 20157350 - 20157383
Alignment:
Q  883 cgacactgacacatatgattacactgaattatgt 916  Q
    |||||| |||||||||||||||||||||||||||    
T  20157350 cgacaccgacacatatgattacactgaattatgt 20157383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 883 - 916
Target Start/End: Complemental strand, 21038142 - 21038109
Alignment:
Q  883 cgacactgacacatatgattacactgaattatgt 916  Q
    |||||||||| |||||||||||||||||||||||    
T  21038142 cgacactgacgcatatgattacactgaattatgt 21038109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 883 - 916
Target Start/End: Complemental strand, 25361945 - 25361912
Alignment:
Q  883 cgacactgacacatatgattacactgaattatgt 916  Q
    |||||||||||||||| |||||||||||||||||    
T  25361945 cgacactgacacatataattacactgaattatgt 25361912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0882 (Bit Score: 174; Significance: 5e-93; HSPs: 1)
Name: scaffold0882
Description:

Target: scaffold0882; HSP #1
Raw Score: 174; E-Value: 5e-93
Query Start/End: Original strand, 68 - 427
Target Start/End: Complemental strand, 1243 - 893
Alignment:
Q  68 ggttttgatgattgacaaaagaagtcctagaagaacaacgaagcaaaaagcggaaaagaaattcaagctatcaagtcttgagtcttgagnnnnnnngttt 167  Q
    |||||||||||| |||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||| ||||||||       ||||    
T  1243 ggttttgatgatggacaaaagaagtcctagacgagcaacgatgcaaaaagcggaaaagaaattcaagctatcaagtcttgtgtcttgagtttttt-gttt 1145  T
Q  168 atattaggactttattgtaagtggttaaaaagctctcatgaaaataaatcacacactcacaatgattttcatctaaa-gtaattttacatgaaaatattt 266  Q
    ||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||| |||| || ||||| ||| |||||||||    
T  1144 atattagaactttattgtaagtggttaaaaagctctcaaaaaaataaatcacacactcacaatggttttcatttaaatgtgattttgcataaaaatattt 1045  T
Q  267 ttacatgaaaagtcataatttattttacaaattgcataattggttttgacattgaaaatatatttgagcttgatgttaatcatttcgtaaatcaaattat 366  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||| || |||| | ||| ||        ||||||||     
T  1044 ttacataaaaagtcagaatttattttacaaattgcataattggttttgacattaaaaatttatttgtgcatgatttgaattat--------tcaaattac 953  T
Q  367 catggttttgacttttgcatacaaatattttcattacataattgattatgtgattctcaaa 427  Q
    ||||| ||| |||||||||||  |||||||||||||||| |||||||| ||| ||||||||    
T  952 catggctttaacttttgcata-taatattttcattacatgattgattacgtggttctcaaa 893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0766 (Bit Score: 174; Significance: 5e-93; HSPs: 1)
Name: scaffold0766
Description:

Target: scaffold0766; HSP #1
Raw Score: 174; E-Value: 5e-93
Query Start/End: Original strand, 68 - 427
Target Start/End: Original strand, 2160 - 2510
Alignment:
Q  68 ggttttgatgattgacaaaagaagtcctagaagaacaacgaagcaaaaagcggaaaagaaattcaagctatcaagtcttgagtcttgagnnnnnnngttt 167  Q
    |||||||||||| |||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||| ||||||||       ||||    
T  2160 ggttttgatgatggacaaaagaagtcctagacgagcaacgatgcaaaaagcggaaaagaaattcaagctatcaagtcttgtgtcttgagtttttt-gttt 2258  T
Q  168 atattaggactttattgtaagtggttaaaaagctctcatgaaaataaatcacacactcacaatgattttcatctaaa-gtaattttacatgaaaatattt 266  Q
    ||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||| |||| || ||||| ||| |||||||||    
T  2259 atattagaactttattgtaagtggttaaaaagctctcaaaaaaataaatcacacactcacaatggttttcatttaaatgtgattttgcataaaaatattt 2358  T
Q  267 ttacatgaaaagtcataatttattttacaaattgcataattggttttgacattgaaaatatatttgagcttgatgttaatcatttcgtaaatcaaattat 366  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||| || |||| | ||| ||        ||||||||     
T  2359 ttacataaaaagtcagaatttattttacaaattgcataattggttttgacattaaaaatttatttgtgcatgatttgaattat--------tcaaattac 2450  T
Q  367 catggttttgacttttgcatacaaatattttcattacataattgattatgtgattctcaaa 427  Q
    ||||| ||| |||||||||||  |||||||||||||||| |||||||| ||| ||||||||    
T  2451 catggctttaacttttgcata-taatattttcattacatgattgattacgtggttctcaaa 2510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 166; Significance: 3e-88; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 166; E-Value: 3e-88
Query Start/End: Original strand, 59 - 413
Target Start/End: Complemental strand, 90127 - 89769
Alignment:
Q  59 ggatacggcggttttgatgattgacaaaagaagtcctagaagaacaacgaagcaaaaagcggaaaagaaattcaagctatcaagtcttgagtcttgagnn 158  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||      
T  90127 ggatacgatggttttgatgattgacaaaagaagtcctagaagaacaacgatgcaaaaagcggaaaagaaattcaaactatcaagtcttgagtgttgagtt 90028  T
Q  159 nnnnngtttatattag---gactttattgtaagtggttaaaaagctctcatgaaaataaatcacacactcacaatgattt--tcatctaaagtaatttta 253  Q
         |||||||||||   ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||  | || | |||| ||||||    
T  90027 tttt-gtttatattagtaggactttattgtaagtggttaaaaagctctcaagaaaataaatcacacactcacaatgtttttattatatgaagtgatttta 89929  T
Q  254 catgaaaatatttttacatgaaaagtcataatttattttacaaattgcataattggttttgacattgaaaatatatttgagcttgatgttaatcatttcg 353  Q
    ||||||||||||||| ||||||| ||||||||||||||   ||| |||||||||| |||||||||| ||||||||||||||   ||| |  ||   |||     
T  89928 catgaaaatatttttgcatgaaaggtcataatttatttccaaaactgcataattgattttgacattaaaaatatatttgagtaagatttggatttattca 89829  T
Q  354 taaatcaaattatcatggttttgac-ttttgcatacaaatattttcattacataattgatt 413  Q
    |||||||||| | ||||| |||||| ||||||||| |||||||||||||||||||||||||    
T  89828 taaatcaaatgaccatggatttgactttttgcata-aaatattttcattacataattgatt 89769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 147; Significance: 6e-77; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 147; E-Value: 6e-77
Query Start/End: Original strand, 767 - 1089
Target Start/End: Complemental strand, 35144812 - 35144489
Alignment:
Q  767 ttttcttgagtg-atttagagtcctaaatcacccaccgattcacacacccacaccgaaaattaagacctacgaagcaagggcactcctcgaattatgtgt 865  Q
    |||||||||||| ||||||||||||||||||| |||| ||||||||||||| |||||||||||||||| |||||||| |  ||||||||| |||| ||||    
T  35144812 ttttcttgagtgcatttagagtcctaaatcactcaccaattcacacacccataccgaaaattaagacccacgaagcatgaacactcctcggattaggtgt 35144713  T
Q  866 atcctgacgtcggtgttcgacactgaca---catatgattacactgaattatgtcattattggtgtctgcatttcgttgtttgtgtcatgtctgatgtct 962  Q
     ||||||||||||||| | ||||  |||   |||||||||| |||||||||||||||| | |||||| || ||||| |||||||||| |||| | | |||    
T  35144712 gtcctgacgtcggtgtccaacaccaacaacgcatatgattagactgaattatgtcattgtcggtgtcagcgtttcgatgtttgtgtcgtgtccggtctct 35144613  T
Q  963 gtgtttatgtttcatagaataaaagtgccatacaagactataatatctcatccatttttcaacattctcatgtctcaacattttgtatctcgaactaaac 1062  Q
     ||||| || |||||||||||||||| ||||| |||||||||| ||||| ||||| |||||||||||   ||||||||||| ||||| ||| ||||| ||    
T  35144612 atgtttgtgcttcatagaataaaagtaccatataagactataacatctcgtccatctttcaacattc---tgtctcaacatcttgtaactccaactagac 35144516  T
Q  1063 tcaatgaaatccaaatctaaagttgtt 1089  Q
    |||||||||||||||||||||||||||    
T  35144515 tcaatgaaatccaaatctaaagttgtt 35144489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 616 - 745
Target Start/End: Original strand, 39038197 - 39038326
Alignment:
Q  616 tccaacggctacttgattttatcatgctacagctagttattttctcatatgaatttcattctcatttttgcatataaatagattctgtgtggtagctcat 715  Q
    ||||||||||| |||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||| |  |||||||||||||    
T  39038197 tccaacggctagttgattttatcatgctacggctagttatattctcaaatgaatttcattctcatttttgcatataaatagatgcattgtggtagctcat 39038296  T
Q  716 ttgtaacaactcatatttgcactaaacatt 745  Q
    ||  ||||||| ||||||||||||||||||    
T  39038297 tttcaacaactaatatttgcactaaacatt 39038326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 9e-33
Query Start/End: Original strand, 70 - 327
Target Start/End: Original strand, 39037622 - 39037876
Alignment:
Q  70 ttttgatgattgacaaaagaagtcctagaagaacaacgaagcaaaaagcggaaaagaaattcaagctatcaagtcttgagtcttgagnnnnnnngtttat 169  Q
    |||||||||||||||||| ||||| ||||||| ||| |   |||||||||||||||||||||||| ||||||||||||  | ||           | | |    
T  39037622 ttttgatgattgacaaaataagtcttagaagagcaatg---caaaaagcggaaaagaaattcaagttatcaagtcttggatttt------atttttatgt 39037712  T
Q  170 attaggactttattgtaagtggttaaaa---agctctcatgaaaataaatcacacactcacaatgattttcatctaaa-gtaattttacatgaaaa-ta- 263  Q
     ||||||||||||| |||||||||||||   |||||||| |||||||||||| |||||||||||||||||||| ||||  ||||||  |||||||| ||     
T  39037713 gttaggactttattttaagtggttaaaaaaaagctctcaagaaaataaatcatacactcacaatgattttcatttaaatctaatttagcatgaaaactat 39037812  T
Q  264 tttttacatgaaaagtcataatttattttacaaattgcataattggttttgacattgaaaatat 327  Q
    ||||||||||| ||| || ||||||||||  |||| |||||||||||||||||||| |||||||    
T  39037813 tttttacatgagaagccaaaatttattttgaaaatggcataattggttttgacattaaaaatat 39037876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 194 - 307
Target Start/End: Original strand, 37785822 - 37785935
Alignment:
Q  194 aaaaagctctcatgaaaataaatcacacactcacaatgattttcatctaaagtaattttacatgaaaatatttttacatgaaaagtcata-atttatttt 292  Q
    ||||| ||||||| |||||||||||||||| ||||||| ||||  || ||||| ||||||| |||||||||||||||| |||||  |||| ||||||  |    
T  37785822 aaaaaactctcattaaaataaatcacacacccacaatgttttttttc-aaagtgattttacgtgaaaatatttttacaggaaaaaccatatatttatcat 37785920  T
Q  293 acaaattgcataatt 307  Q
    | |||||||||||||    
T  37785921 agaaattgcataatt 37785935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0303 (Bit Score: 136; Significance: 2e-70; HSPs: 1)
Name: scaffold0303
Description:

Target: scaffold0303; HSP #1
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 11 - 327
Target Start/End: Original strand, 20363 - 20670
Alignment:
Q  11 catcatcaaaaagggggagaatgtgaatatatgctttgacaggatacgggatacggcggttttgatgattgacaaaagaagtcctagaagaacaacgaag 110  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||  ||     ||||||||||||||||||||||||||||||||||||||||| |    
T  20363 catcatcaaaaagggggagaatgtcaatatatgccttgacaggatacg--at-----ggttttgatgattgacaaaagaagtcctagaagaacaacgatg 20455  T
Q  111 caaaaagcggaaaagaa-attcaagctatcaagtcttgagtcttgagnnnnnnngtttatattaggactttattgtaagtggtta-aaaagctctcatga 208  Q
    ||||||||||||||||| ||||||||| || |||||||| | || |         ||| |||||||||||||| |||||| ||   ||||||||||||||    
T  20456 caaaaagcggaaaagaatattcaagctttctagtcttgaattttaatttta----tttgtattaggactttat-gtaagtagtaccaaaagctctcatga 20550  T
Q  209 aaataaatcacacactcacaatgattttcatctaaa-gtaattttacatgaaaatatttttacatgaaaagtcataatttattttacaaattgcataatt 307  Q
    ||||||||||||||||||||||||||||||| |||| || |||||  || |||||||||||||||||||| | |||||||||||||||||||||||||||    
T  20551 aaataaatcacacactcacaatgattttcatttaaatgtgattttgaattaaaatatttttacatgaaaaattataatttattttacaaattgcataatt 20650  T
Q  308 ggttttgacattgaaaatat 327  Q
      |||||||||| |||||||    
T  20651 ctttttgacattaaaaatat 20670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 81; Significance: 1e-37; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 69 - 307
Target Start/End: Original strand, 8328 - 8566
Alignment:
Q  69 gttttgatgattgacaaaagaagtcctagaagaacaacgaagcaaaaagcggaaaagaa-attcaagctatcaagtcttgagtcttgagnnnnnnngttt 167  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||| ||||||||| ||||||||||  | || |         |||    
T  8328 gttttgatgattgacaaaagaagtcctagaagaacaaagatgcaaaaagccgaaaagaagattcaagctttcaagtcttggattttaattttta---ttt 8424  T
Q  168 atattaggactttattgtaagtggtt-aaaaagctctcatgaaaa-taaatcacacactcacaatgattttcatctaaagtaattttacatgaaaatatt 265  Q
     | ||||||||||  ||||||| ||  ||||||||||||| |||| || ||||||||||||||||| ||||||| |||||| ||||||||| ||||||||    
T  8425 gttttaggacttttatgtaagtagtagaaaaagctctcattaaaaatatatcacacactcacaatgtttttcatataaagtgattttacataaaaatatt 8524  T
Q  266 tttacatgaaaagtcataatttattttacaaattgcataatt 307  Q
    ||| ||||||||| ||||||| ||| |  |||||||||||||    
T  8525 tttgcatgaaaagccataattaattatgtaaattgcataatt 8566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 78; Significance: 9e-36; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 68 - 333
Target Start/End: Complemental strand, 32107 - 31847
Alignment:
Q  68 ggttttgatgattgacaaaagaagtcctagaagaacaacgaagcaaaaagcggaaaagaa-attcaagctatcaagtcttgagtcttgagnnnnnnngtt 166  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||| ||||||||| || |||||||  | ||           |     
T  32107 ggttttgatgattgacaaatgaagtcctagaagaacaacgatgcataaagcggaaaagaatattcaagctttctagtcttggatttt------attttta 32014  T
Q  167 tatattaggactttattgtaagtggtt-aaaaagctctcatgaaaataaatcacacactcacaatgattttcatct-aaagtaattttacatgaaaatat 264  Q
    | |||||||||||||| |||| | ||  |||||||||||||||||||| |||||||||||||| ||||||| || | ||||||||||| ||||||||| |    
T  32013 tttattaggactttat-gtaaatagtagaaaaagctctcatgaaaatacatcacacactcacattgatttttatttaaaagtaattttgcatgaaaatgt 31915  T
Q  265 ttttacatgaaaagtcataatttattttacaaattgcataattggttttgacattgaaaatatatttga 333  Q
    |||| ||||||||   | |||| |||||| |||||| |||||| ||||||||||| |||||||||||||    
T  31914 ttttgcatgaaaaccgagaattgattttagaaattgtataatt-gttttgacattaaaaatatatttga 31847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 74; Significance: 2e-33; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 11 - 268
Target Start/End: Complemental strand, 113790 - 113542
Alignment:
Q  11 catcatcaaaaagggggagaatgtgaatatatgctttgacaggatacgggatacggcggttttgatgattgacaaaagaagtcctagaagaacaacgaag 110  Q
    |||||||||||||||||||||||||||||||||| |||||||||      | ||    |||||||| ||||||||| ||||||||||||||||| ||| |    
T  113790 catcatcaaaaagggggagaatgtgaatatatgccttgacagga------acactttagttttgataattgacaaatgaagtcctagaagaacagcgatg 113697  T
Q  111 caaaaagcggaaaagaa-attcaagctatcaagtcttgagtcttgagnnnnnnngtttatattaggactttattgtaagtggtt-aaaaagctctcatga 208  Q
    ||||||||||||||||| ||||||||| || |||||||  | ||           |||||||||||||||||| |||||| ||  |||||||||||||||    
T  113696 caaaaagcggaaaagaagattcaagctttctagtcttggatttt----atttttatttatattaggactttat-gtaagtagtagaaaaagctctcatga 113602  T
Q  209 aaataaatcacacactcacaatgattttcatctaaagtaattttacatgaaaatattttt 268  Q
    ||||||||||| || ||||||| ||||||||||||  | ||||| ||||||| |||||||    
T  113601 aaataaatcacgcagtcacaataattttcatctaacatgattttgcatgaaattattttt 113542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 69 - 307
Target Start/End: Complemental strand, 354726 - 354488
Alignment:
Q  69 gttttgatgattgacaaaagaagtcctagaagaacaacgaagcaaaaagcggaaaagaa-attcaagctatcaagtctt-gagtcttgagnnnnnnngtt 166  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||| ||||||||| || |||            ||    
T  354726 gttttgatgattgacaaaagaagtcctagaagaacaaagatgcaaaaagcggaaaagaagattcaagctttcaagtcttagattct----aatttttatt 354631  T
Q  167 tatattaggactttattgtaagtggt-taaaaagctctc-atgaaaataaatcacacactcacaatgattttcatctaaagtaattttacatgaaaatat 264  Q
    | | ||||||||||  ||||||| ||  |||||||||||  | |||||| ||||||||||||||||| ||||||| |||||| ||||||||| |||||||    
T  354630 tgttttaggacttttatgtaagtagtagaaaaagctctcgttaaaaatatatcacacactcacaatgtttttcatataaagtgattttacataaaaatat 354531  T
Q  265 ttttacatgaaaagtcataatttattttacaaattgcataatt 307  Q
    |||| |||  |||| ||||||  ||| |  |||||||||||||    
T  354530 ttttgcatataaagccataatcaattatgtaaattgcataatt 354488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 5e-28; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 194 - 333
Target Start/End: Complemental strand, 20728157 - 20728018
Alignment:
Q  194 aaaaagctctcatgaaaataaatcacacactcacaatgattttcatct-aaagtaattttacatgaaaatatttttacatgaaaagtcataatttatttt 292  Q
    |||||||||||||||||||| |||||||||||||| ||||||| || | ||||||||||| ||||||||| ||||| ||||||||   | |||| |||||    
T  20728157 aaaaagctctcatgaaaatacatcacacactcacattgatttttatttaaaagtaattttgcatgaaaatgtttttgcatgaaaaccgagaattgatttt 20728058  T
Q  293 acaaattgcataattggttttgacattgaaaatatatttga 333  Q
    | |||||| |||||| ||||||||||| |||||||||||||    
T  20728057 agaaattgtataatt-gttttgacattaaaaatatatttga 20728018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 551 - 660
Target Start/End: Complemental strand, 25417080 - 25416977
Alignment:
Q  551 tgattcttaaaaagattacatattgcctaattggtctatatgtattcaacgactaattttgtatgtccaacggctacttgattttatcatgctacagcta 650  Q
    |||||| ||||| |||||||| || ||||||||||||||||||||||||   ||||      |||||||||||||||||||||||||  |||||| ||||    
T  25417080 tgattcataaaaggattacatttttcctaattggtctatatgtattcaattgctaa------atgtccaacggctacttgattttatattgctacggcta 25416987  T
Q  651 gttattttct 660  Q
    ||||||||||    
T  25416986 gttattttct 25416977  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 148
Target Start/End: Original strand, 26794805 - 26794884
Alignment:
Q  69 gttttgatgattgacaaaagaagtcctagaagaacaacgaagcaaaaagcggaaaagaaattcaagctatcaagtcttga 148  Q
    ||||| || |||||||||||||||| |||||||||||||| |||  ||||| ||||||||||||||||| | ||||||||    
T  26794805 gttttaataattgacaaaagaagtcttagaagaacaacgatgcagtaagcgaaaaagaaattcaagctaccgagtcttga 26794884  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 266 - 327
Target Start/End: Original strand, 24779619 - 24779680
Alignment:
Q  266 tttacatgaaaagtcataatttattttacaaattgcataattggttttgacattgaaaatat 327  Q
    |||||||||||| | |||||||||||||||||||||||||||  |||||||||| |||||||    
T  24779619 tttacatgaaaatttataatttattttacaaattgcataattatttttgacattaaaaatat 24779680  T

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Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 236
Target Start/End: Complemental strand, 2997157 - 2997092
Alignment:
Q  169 tattaggactttattgtaagtggttaaaaagctctcatgaaaataaatcacacactcacaatgatttt 236  Q
    ||||||||| || ||||||||||||||||  ||||||||||||||||||||||||| |||||| ||||    
T  2997157 tattaggacattgttgtaagtggttaaaa--ctctcatgaaaataaatcacacactaacaatgttttt 2997092  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 878 - 920
Target Start/End: Complemental strand, 18571036 - 18570994
Alignment:
Q  878 gtgttcgacactgacacatatgattacactgaattatgtcatt 920  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  18571036 gtgttcgacactgacacatatgattacattgaattatgtcatt 18570994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 24779570 - 24779610
Alignment:
Q  195 aaaagctctcatgaaaataaatcacacactcacaatgattt 235  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  24779570 aaaagctctcatgaaaataaatcacacactcgcaatgattt 24779610  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 277
Target Start/End: Complemental strand, 21546703 - 21546631
Alignment:
Q  206 tgaaaataaatcacacactcacaatgattttcatcta-aagtaattttacatgaaaatatttttacatgaaaa 277  Q
    |||||||||||||||||||||  ||||||||||  || |||| | ||| ||||||||||||||||||| ||||    
T  21546703 tgaaaataaatcacacactcaagatgattttcaaatataagtgactttgcatgaaaatatttttacataaaaa 21546631  T

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Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 884 - 920
Target Start/End: Original strand, 37402085 - 37402121
Alignment:
Q  884 gacactgacacatatgattacactgaattatgtcatt 920  Q
    |||||||||||||||||||||| ||||||||||||||    
T  37402085 gacactgacacatatgattacattgaattatgtcatt 37402121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 244
Target Start/End: Complemental strand, 4183133 - 4183083
Alignment:
Q  194 aaaaagctctcatgaaaataaatcacacactcacaatgattttcatctaaa 244  Q
    ||||||||||| | ||||||||||||||| ||||||| |||||||| ||||    
T  4183133 aaaaagctctcttaaaaataaatcacacattcacaataattttcatttaaa 4183083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 890 - 920
Target Start/End: Original strand, 4229415 - 4229445
Alignment:
Q  890 gacacatatgattacactgaattatgtcatt 920  Q
    |||||||||||||||||||||||||||||||    
T  4229415 gacacatatgattacactgaattatgtcatt 4229445  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 878 - 916
Target Start/End: Complemental strand, 31808141 - 31808103
Alignment:
Q  878 gtgttcgacactgacacatatgattacactgaattatgt 916  Q
    |||||| |||||||||||||| |||||||||||||||||    
T  31808141 gtgttcaacactgacacatataattacactgaattatgt 31808103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 878 - 916
Target Start/End: Original strand, 34993977 - 34994015
Alignment:
Q  878 gtgttcgacactgacacatatgattacactgaattatgt 916  Q
    ||||||||||||||||||||| |||||| ||||||||||    
T  34993977 gtgttcgacactgacacatataattacattgaattatgt 34994015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 8e-27; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 68 - 146
Target Start/End: Complemental strand, 18070153 - 18070075
Alignment:
Q  68 ggttttgatgattgacaaaagaagtcctagaagaacaacgaagcaaaaagcggaaaagaaattcaagctatcaagtctt 146  Q
    |||||||||||||||||||||||||||||||||||||| || | |||| ||||||||||||||||||||||||||||||    
T  18070153 ggttttgatgattgacaaaagaagtcctagaagaacaaagatgtaaaaggcggaaaagaaattcaagctatcaagtctt 18070075  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 11 - 290
Target Start/End: Complemental strand, 8595656 - 8595388
Alignment:
Q  11 catcatcaaaaagggggagaatgtgaatatatgctttgacaggatacgggatacggcggttttgatgattgacaaaagaagtcctagaagaacaacgaag 110  Q
    |||||||||||||| ||||||||||||||| ||| |||||| ||      |||    |||||||||||||||||||||||||||||||||| |||  | |    
T  8595656 catcatcaaaaaggtggagaatgtgaatatctgccttgacatga------atagaatggttttgatgattgacaaaagaagtcctagaagatcaaaaatg 8595563  T
Q  111 caaaaagcggaaaagaa-attcaagctatcaagtcttgagtcttgagnnnnnnngtttatattaggactttattgtaagtggt-taaaaagctctcatga 208  Q
    ||||||||||||||||| ||||||||  ||||||||||  | ||           ||| | |||||||| | |||||||| ||  ||||||||||||| |    
T  8595562 caaaaagcggaaaagaagattcaagccttcaagtcttggatttt----atttttatttgttttaggactat-ttgtaagtagtagaaaaagctctcatta 8595468  T
Q  209 aaataaatcacacactcacaatgattttcatct-aaagtaattttacatgaaaatatttttacatgaaaagtcataatttatt 290  Q
    ||||||||||||||||  ||||| |||| || | ||||| ||||| ||||||||||||||| ||||||||| |||||||||||    
T  8595467 aaataaatcacacact--caatggtttttatttaaaagtgattttgcatgaaaatattttt-catgaaaagccataatttatt 8595388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 187 - 307
Target Start/End: Complemental strand, 18070008 - 18069888
Alignment:
Q  187 agtggttaaaaagctctcatgaaaataaatcacacactcacaatgattttcatctaaa-gtaattttacatgaaaatatttttacatgaaaagtcataat 285  Q
    |||||||||||||||||||||||||||||||||| |||||||||  ||||||| ||||  | ||||| ||| ||||||||||| | ||||||| |||  |    
T  18070008 agtggttaaaaagctctcatgaaaataaatcacatactcacaatatttttcatataaacatgattttgcattaaaatattttt-cttgaaaagccatttt 18069910  T
Q  286 ttattttacaaattgcataatt 307  Q
    ||||| |  |||||||||||||    
T  18069909 ttattatgaaaattgcataatt 18069888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 74 - 127
Target Start/End: Original strand, 15889623 - 15889676
Alignment:
Q  74 gatgattgacaaaagaagtcctagaagaacaacgaagcaaaaagcggaaaagaa 127  Q
    ||||||||||||||||||||||||| |||||| || ||||||||||||||||||    
T  15889623 gatgattgacaaaagaagtcctagatgaacaaagatgcaaaaagcggaaaagaa 15889676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 206 - 290
Target Start/End: Original strand, 8826295 - 8826379
Alignment:
Q  206 tgaaaataaatcacacactcacaatgattttcatctaaagtaattttacatgaaaatatttttacatgaaaagtcataatttatt 290  Q
    ||||||||||||||||  |||||||||||||||| |||||||||||| | ||||| | ||||| ||||||||   ||||||||||    
T  8826295 tgaaaataaatcacaccgtcacaatgattttcatataaagtaatttttcttgaaactttttttgcatgaaaaactataatttatt 8826379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 264
Target Start/End: Original strand, 1907764 - 1907838
Alignment:
Q  190 ggttaaaaagctctcatgaaaataaatcacacactcacaatgattttcatctaaagtaattttacatgaaaatat 264  Q
    ||||||||  ||||||||||||||| ||||||| |||| | ||||||||| || ||| |||||| ||||||||||    
T  1907764 ggttaaaagactctcatgaaaataagtcacacattcacgaagattttcatgtacagtgattttaaatgaaaatat 1907838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 102
Target Start/End: Original strand, 8826116 - 8826188
Alignment:
Q  24 ggggagaatgtgaatatatgctttgacaggatacgggatacggcggttttgatgattgacaaaagaagtcctagaagaa 102  Q
    |||| |||||||||||||||| |||||||||      ||||   ||||||||||||||||||||||||| |||||||||    
T  8826116 ggggggaatgtgaatatatgccttgacagga------atacattggttttgatgattgacaaaagaagtgctagaagaa 8826188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 878 - 916
Target Start/End: Complemental strand, 4909215 - 4909177
Alignment:
Q  878 gtgttcgacactgacacatatgattacactgaattatgt 916  Q
    |||| ||||||||||||||||||||||| ||||||||||    
T  4909215 gtgtccgacactgacacatatgattacaatgaattatgt 4909177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 883 - 916
Target Start/End: Original strand, 18013074 - 18013107
Alignment:
Q  883 cgacactgacacatatgattacactgaattatgt 916  Q
    |||||||||||||||| |||||||||||||||||    
T  18013074 cgacactgacacatataattacactgaattatgt 18013107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 877 - 914
Target Start/End: Complemental strand, 18227009 - 18226972
Alignment:
Q  877 ggtgttcgacactgacacatatgattacactgaattat 914  Q
    |||||||||||| |||||||||||||| ||||||||||    
T  18227009 ggtgttcgacaccgacacatatgattatactgaattat 18226972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1744 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold1744
Description:

Target: scaffold1744; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 268
Target Start/End: Complemental strand, 1172 - 1098
Alignment:
Q  193 taaaaagctctcatgaaaataaatcacacactcacaatgattttcatctaaagtaattttacatgaaaatattttt 268  Q
    |||||||||||||| ||||||||||||||||||||||| || ||  || ||||| |||||||||||||||||||||    
T  1172 taaaaagctctcattaaaataaatcacacactcacaat-atctttttcgaaagtgattttacatgaaaatattttt 1098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 236
Target Start/End: Complemental strand, 17983413 - 17983348
Alignment:
Q  169 tattaggactttattgtaagtggttaaaaagctctcatgaaaataaatcacacactcacaatgatttt 236  Q
    ||||||||| || ||||||||||||||||  ||||||||||||||||||||||||| |||||| ||||    
T  17983413 tattaggacattgttgtaagtggttaaaa--ctctcatgaaaataaatcacacactaacaatgttttt 17983348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 885 - 920
Target Start/End: Original strand, 18513243 - 18513278
Alignment:
Q  885 acactgacacatatgattacactgaattatgtcatt 920  Q
    ||||||||||||||||||||| ||||||||||||||    
T  18513243 acactgacacatatgattacattgaattatgtcatt 18513278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 883 - 920
Target Start/End: Complemental strand, 56981 - 56944
Alignment:
Q  883 cgacactgacacatatgattacactgaattatgtcatt 920  Q
    |||||||||||| ||||||||||||||||||| |||||    
T  56981 cgacactgacacttatgattacactgaattatatcatt 56944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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