View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18318_high_16 (Length: 448)

Name: NF18318_high_16
Description: NF18318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18318_high_16
NF18318_high_16
[»] chr1 (19 HSPs)
chr1 (15-426)||(40662822-40663233)
chr1 (132-259)||(34915014-34915141)
chr1 (187-282)||(3515821-3515916)
chr1 (160-259)||(16556456-16556555)
chr1 (74-257)||(28267921-28268100)
chr1 (187-257)||(11049253-11049323)
chr1 (298-352)||(51500080-51500134)
chr1 (160-261)||(47899231-47899330)
chr1 (191-259)||(7524120-7524188)
chr1 (188-259)||(28287346-28287417)
chr1 (187-248)||(28083909-28083970)
chr1 (187-259)||(30557507-30557577)
chr1 (196-249)||(36660503-36660556)
chr1 (187-240)||(47892417-47892470)
chr1 (187-259)||(1514346-1514418)
chr1 (187-259)||(30850409-30850481)
chr1 (224-259)||(2555941-2555976)
chr1 (160-194)||(52059303-52059337)
chr1 (188-233)||(51500870-51500915)
[»] chr5 (13 HSPs)
chr5 (69-259)||(15368259-15368448)
chr5 (162-251)||(2937600-2937689)
chr5 (163-259)||(29821954-29822054)
chr5 (187-257)||(6951317-6951387)
chr5 (69-110)||(2864461-2864502)
chr5 (187-259)||(9818737-9818810)
chr5 (310-358)||(117383-117431)
chr5 (187-251)||(18851100-18851164)
chr5 (187-249)||(22226256-22226318)
chr5 (68-113)||(2937731-2937776)
chr5 (308-358)||(9818868-9818920)
chr5 (310-358)||(35757058-35757106)
chr5 (191-259)||(42858115-42858183)
[»] chr3 (14 HSPs)
chr3 (69-259)||(31708249-31708435)
chr3 (77-259)||(31012914-31013093)
chr3 (185-257)||(31492768-31492839)
chr3 (327-361)||(31708136-31708170)
chr3 (307-358)||(42484399-42484452)
chr3 (160-208)||(24649424-24649472)
chr3 (304-352)||(36550068-36550116)
chr3 (187-259)||(40147860-40147932)
chr3 (69-148)||(14021835-14021913)
chr3 (187-259)||(27266804-27266876)
chr3 (309-358)||(31013167-31013218)
chr3 (205-249)||(32523360-32523404)
chr3 (207-251)||(41596167-41596211)
chr3 (211-259)||(46853544-46853592)
[»] chr4 (17 HSPs)
chr4 (181-259)||(52965864-52965942)
chr4 (162-260)||(38716545-38716636)
chr4 (187-259)||(32818380-32818452)
chr4 (205-254)||(45011895-45011944)
chr4 (187-251)||(8604640-8604704)
chr4 (191-251)||(35065070-35065130)
chr4 (304-361)||(20712712-20712769)
chr4 (187-250)||(1048720-1048783)
chr4 (159-257)||(53655146-53655243)
chr4 (205-258)||(21691223-21691276)
chr4 (180-257)||(44278979-44279056)
chr4 (187-243)||(1616394-1616449)
chr4 (69-125)||(6463888-6463944)
chr4 (187-259)||(26617471-26617543)
chr4 (187-251)||(30357515-30357579)
chr4 (197-261)||(33843990-33844054)
chr4 (62-110)||(53655047-53655095)
[»] chr7 (6 HSPs)
chr7 (187-259)||(41386825-41386897)
chr7 (168-249)||(1442557-1442638)
chr7 (187-259)||(27571865-27571937)
chr7 (228-259)||(32295228-32295259)
chr7 (191-240)||(28725081-28725130)
chr7 (213-257)||(42816480-42816524)
[»] chr2 (8 HSPs)
chr2 (185-259)||(5533041-5533115)
chr2 (187-250)||(42982547-42982610)
chr2 (187-259)||(43501128-43501198)
chr2 (159-260)||(17281383-17281485)
chr2 (187-249)||(42740980-42741042)
chr2 (224-261)||(31415375-31415412)
chr2 (187-233)||(30503212-30503258)
chr2 (197-259)||(33019166-33019228)
[»] chr8 (9 HSPs)
chr8 (187-259)||(4662913-4662985)
chr8 (187-259)||(13384664-13384736)
chr8 (187-259)||(32927895-32927967)
chr8 (187-261)||(35494993-35495067)
chr8 (187-259)||(38868501-38868573)
chr8 (188-259)||(26100156-26100227)
chr8 (187-259)||(15677825-15677898)
chr8 (187-259)||(37684408-37684480)
chr8 (187-251)||(32994260-32994324)
[»] chr6 (10 HSPs)
chr6 (159-246)||(10669486-10669573)
chr6 (187-251)||(4910911-4910975)
chr6 (186-257)||(6654102-6654173)
chr6 (204-259)||(46298-46355)
chr6 (187-259)||(1485156-1485228)
chr6 (187-251)||(7952727-7952791)
chr6 (207-259)||(17225875-17225927)
chr6 (187-259)||(25195853-25195925)
chr6 (187-233)||(765422-765468)
chr6 (211-259)||(34027427-34027475)


Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 15 - 426
Target Start/End: Complemental strand, 40663233 - 40662822
Alignment:
Q  15 cagagacaaatgaacgctcgtaatagtttgagatgatggaaatggattaagagggtgtttggtttcacttttagatgccttaaaagtgcttttcaaatgt 114  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  40663233 cagagacaaatggacgctcgtaatagtttgagatgatggaaatggattaagagggtgtttgttttcacttttagatgccataaaagtgcttttcaaatgt 40663134  T
Q  115 caaaagcaatttacactctataaaattatatttgacannnnnnngagaaatcaattttgtagactaaaaacaattctacttaaagctagtatttgtagct 214  Q
    |||||||||||||||||||||||||||||||||||||       |||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  40663133 caaaagcaatttacactctataaaattatatttgacatttttttgagaaatcaattttatagactaaaaacaattctacttaaagctagtatttgtagct 40663034  T
Q  215 tttgattcaagaattgattctaacacacaaatttataattcaacttaatgtacccaaacacaaatcacnnnnnnnngcaactaactataagtcagaatca 314  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||    
T  40663033 tttgattcaagaattgat--taacacacaaatttataattcaacttaatgtacccaaacacaaatcacttttttttgcaactaactataagtcagaatca 40662936  T
Q  315 attcactc--aattaattcttgtcaaagcagaaccaaacatacactaaatgcaaccacatatgacccaccttcaatctaaagtatcggtgctacatacat 412  Q
    ||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  40662935 attcactcaaaattaattcttgtcaaaacagaaccaaacatacactaaatgcaaccacatatgaccggccttcaatctaaagtatcggtgctacatacat 40662836  T
Q  413 acactacaagctga 426  Q
    ||||||||||||||    
T  40662835 acactacaagctga 40662822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 132 - 259
Target Start/End: Original strand, 34915014 - 34915141
Alignment:
Q  132 ctataaaattatatttgacannnnnnngagaaatcaattttgtagactaaaaacaattctacttaaagctagtatttgtagcttttgattcaagaattga 231  Q
    |||||||||||| |||||||       |||||||||||||||  ||||||||  ||||||| || |||||| | ||||||||||||||||| ||||||||    
T  34915014 ctataaaattatgtttgacatgattttgagaaatcaattttgaggactaaaagaaattctagttgaagctattctttgtagcttttgattctagaattga 34915113  T
Q  232 ttctaacacacaaatttataattcaact 259  Q
    ||||||||||| | ||||||||||||||    
T  34915114 ttctaacacaccattttataattcaact 34915141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 187 - 282
Target Start/End: Original strand, 3515821 - 3515916
Alignment:
Q  187 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaacttaatgtacccaaacacaaatcac 282  Q
    ||||||||| ||||||| | ||||||||||| |||| |||||||||| | |||| |||| |||| |||||||| |||||| |||||||||||||||    
T  3515821 attctacttgaagctagaaattgtagcttttcattctagaattgatttttacactcaaaattatcattcaactaaatgtatccaaacacaaatcac 3515916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 160 - 259
Target Start/End: Original strand, 16556456 - 16556555
Alignment:
Q  160 agaaatcaattttgtagactaaaaacaattctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaact 259  Q
    |||||||| ||||| ||||||||||||| || |||  || ||| |||||  | |||||||||| |||||||||||| ||||||||||| |||||||||||    
T  16556456 agaaatcagttttggagactaaaaacaactcgactcgaaactactatttacaacttttgattctagaattgattctgacacacaaattcataattcaact 16556555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 74 - 257
Target Start/End: Complemental strand, 28268100 - 28267921
Alignment:
Q  74 tggtttcacttttagatgccttaaaagtgcttttcaaatgtcaaaagcaatttacactctataaaattatatttgacannnnnnngagaaatcaattttg 173  Q
    |||||||||||||||||| |||| ||||| ||||||| ||||||||||||||   |||| |||||||| | |||| ||        ||||||||||||||    
T  28268100 tggtttcacttttagatgtcttagaagtgtttttcaagtgtcaaaagcaattctaactccataaaattttgtttggcattttttt-agaaatcaattttg 28268002  T
Q  174 tagactaaaaacaattctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaa 257  Q
     |||||||||  ||||||||||  || || | ||||||| || |||||| |||||| ||| |||| || |||||||||||||||    
T  28268001 gagactaaaaggaattctactt--aggtact-tttgtagtttatgattctagaattaattttaacgcataaatttataattcaa 28267921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 187 - 257
Target Start/End: Original strand, 11049253 - 11049323
Alignment:
Q  187 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaa 257  Q
    ||||||||| ||||||| |||||||||||||||||| | |||||||| | ||||||||||||||| |||||    
T  11049253 attctacttgaagctaggatttgtagcttttgattctaaaattgatttttacacacaaatttatagttcaa 11049323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 298 - 352
Target Start/End: Complemental strand, 51500134 - 51500080
Alignment:
Q  298 actataagtcagaatcaattcactcaattaattcttgtcaaagcagaaccaaaca 352  Q
    ||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  51500134 actattagtcaaaatcaattcactcaattaattcttgtcaacgcagaaccaaaca 51500080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 160 - 261
Target Start/End: Original strand, 47899231 - 47899330
Alignment:
Q  160 agaaatcaattttgtagactaaaaacaattctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaact 259  Q
    ||||||||||||||  |||||||||||||||||||  |||||| ||||||||| |||| |||  ||| |||||  ||| ||||||| |||| ||||||||    
T  47899231 agaaatcaattttgaggactaaaaacaattctactagaagctactatttgtagttttttattttagatttgat--taaaacacaaacttatgattcaact 47899328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 191 - 259
Target Start/End: Original strand, 7524120 - 7524188
Alignment:
Q  191 tacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaact 259  Q
    ||||| ||| ||| |||||||||||||||||  |||||||||| | ||||||||||||||| |||||||    
T  7524120 tacttgaagttaggatttgtagcttttgattatagaattgatttttacacacaaatttatagttcaact 7524188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 188 - 259
Target Start/End: Complemental strand, 28287417 - 28287346
Alignment:
Q  188 ttctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaact 259  Q
    |||||||| |||| || |||||||||||||||||  |||||||||| |||||| |||||||||  |||||||    
T  28287417 ttctacttgaagcaaggatttgtagcttttgattttagaattgattttaacactcaaatttattgttcaact 28287346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 28083970 - 28083909
Alignment:
Q  187 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaattt 248  Q
    ||||||||| ||||||| |||||||||||||||||| | |||| ||| | ||||||||||||    
T  28083970 attctacttgaagctagaatttgtagcttttgattctataattaatttttacacacaaattt 28083909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 187 - 259
Target Start/End: Original strand, 30557507 - 30557577
Alignment:
Q  187 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaact 259  Q
    |||||| || ||||||| |||||||| ||||||||| |||||||||| |  |||||||||||||| |||||||    
T  30557507 attctagttgaagctaggatttgtagtttttgattctagaattgatttt--cacacaaatttatagttcaact 30557577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 196 - 249
Target Start/End: Complemental strand, 36660556 - 36660503
Alignment:
Q  196 aaagctagtatttgtagcttttgattcaagaattgattctaacacacaaattta 249  Q
    ||||||| ||||| ||||||||||||| | |||||| |||||||||||||||||    
T  36660556 aaagctactatttctagcttttgattctaaaattgaatctaacacacaaattta 36660503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 47892470 - 47892417
Alignment:
Q  187 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacac 240  Q
    ||||||||||||||||| | ||| |||||||||||| |||||||||| ||||||    
T  47892470 attctacttaaagctagaaattgaagcttttgattctagaattgattttaacac 47892417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 187 - 259
Target Start/End: Original strand, 1514346 - 1514418
Alignment:
Q  187 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaact 259  Q
    ||||||||| ||||||| ||||||||||||| |||  | |||||||| | ||||||||||||||  |||||||    
T  1514346 attctacttgaagctaggatttgtagctttttattatataattgatttttacacacaaatttattgttcaact 1514418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 187 - 259
Target Start/End: Complemental strand, 30850481 - 30850409
Alignment:
Q  187 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaact 259  Q
    ||||||||| || |||| |||||||| |||| |||  |||||||||| ||||| ||||||||||| |||||||    
T  30850481 attctacttgaaactaggatttgtagtttttaattttagaattgattttaacatacaaatttatagttcaact 30850409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 259
Target Start/End: Original strand, 2555941 - 2555976
Alignment:
Q  224 agaattgattctaacacacaaatttataattcaact 259  Q
    |||||||||||||||| |||||||||||||||||||    
T  2555941 agaattgattctaacatacaaatttataattcaact 2555976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 194
Target Start/End: Original strand, 52059303 - 52059337
Alignment:
Q  160 agaaatcaattttgtagactaaaaacaattctact 194  Q
    |||||||||||||| ||||||||||||||||||||    
T  52059303 agaaatcaattttggagactaaaaacaattctact 52059337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 51500915 - 51500870
Alignment:
Q  188 ttctacttaaagctagtatttgtagcttttgattcaagaattgatt 233  Q
    |||||||| || |||| |||||||||||||||||| ||||||||||    
T  51500915 ttctacttgaacctaggatttgtagcttttgattctagaattgatt 51500870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 9e-34; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 69 - 259
Target Start/End: Original strand, 15368259 - 15368448
Alignment:
Q  69 gtgtttggtttcacttttagatgccttaaaagtgcttttcaaatgtcaaaagcaatttacactctataaaattatatttgacannnnnnngagaaatcaa 168  Q
    |||||||||||||||| |||||| | || ||||||||||||| ||  ||||||||| |  ||||||||||||||| | || ||       ||||||||||    
T  15368259 gtgtttggtttcacttctagatgtcctagaagtgcttttcaagtgctaaaagcaatctt-actctataaaattatgtatggcattttatcgagaaatcaa 15368357  T
Q  169 ttttgtagactaaaaacaattctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaact 259  Q
    |||||   ||||||| ||||||||||| |||||| || ||||| |||||||||  ||||||||||||||||||||||||||||||||||||    
T  15368358 ttttgggaactaaaagcaattctacttgaagctactagttgtaacttttgattatagaattgattctaacacacaaatttataattcaact 15368448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 162 - 251
Target Start/End: Complemental strand, 2937689 - 2937600
Alignment:
Q  162 aaatcaattttgtagactaaaaacaattctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttata 251  Q
    ||||||||||||   |||||||  ||||||||||||||||| |||||||||| |||||||| |||||||||| |||||||||||||||||    
T  2937689 aaatcaattttgggaactaaaagaaattctacttaaagctactatttgtagcctttgattctagaattgattataacacacaaatttata 2937600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 163 - 259
Target Start/End: Original strand, 29821954 - 29822054
Alignment:
Q  163 aatcaattttgtagactaaaaacaattctacttaaagctagtatttgtagcttttgat----tcaagaattgattctaacacacaaatttataattcaac 258  Q
    ||||||||||| ||| |||||||||||||| || |||||| ||||||||| |||||||    | |  |||||||||||||| |||||||||| |||||||    
T  29821954 aatcaattttggagattaaaaacaattctatttgaagctattatttgtagtttttgattttataattaattgattctaacatacaaatttatcattcaac 29822053  T
Q  259 t 259  Q
    |    
T  29822054 t 29822054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 187 - 257
Target Start/End: Complemental strand, 6951387 - 6951317
Alignment:
Q  187 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaa 257  Q
    ||||||||| ||| ||| |||||||||||||||||| | ||||||||   ||||| |||||||||||||||    
T  6951387 attctacttgaagttaggatttgtagcttttgattctataattgatttgtacacataaatttataattcaa 6951317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 69 - 110
Target Start/End: Original strand, 2864461 - 2864502
Alignment:
Q  69 gtgtttggtttcacttttagatgccttaaaagtgcttttcaa 110  Q
    |||||||||||||||||||||||| ||| |||||||||||||    
T  2864461 gtgtttggtttcacttttagatgctttagaagtgcttttcaa 2864502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 187 - 259
Target Start/End: Original strand, 9818737 - 9818810
Alignment:
Q  187 attctacttaaagctagtatttgtagcttttgattcaagaattga-ttctaacacacaaatttataattcaact 259  Q
    ||||||||| ||||||  |||||||||||||||||| |||||||| || | | ||||||||||||| |||||||    
T  9818737 attctacttgaagctatgatttgtagcttttgattctagaattgattttttaaacacaaatttatagttcaact 9818810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 358
Target Start/End: Complemental strand, 117431 - 117383
Alignment:
Q  310 aatcaattcactcaattaattcttgtcaaagcagaaccaaacatacact 358  Q
    |||||||||||||||| |||| |||||||  ||||||||||||||||||    
T  117431 aatcaattcactcaatcaatttttgtcaacacagaaccaaacatacact 117383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 187 - 251
Target Start/End: Complemental strand, 18851164 - 18851100
Alignment:
Q  187 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttata 251  Q
    ||||||||| ||||||  |||||||||||||||||  |||||||||| | ||||||| |||||||    
T  18851164 attctacttgaagctatgatttgtagcttttgattatagaattgattttcacacacatatttata 18851100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 249
Target Start/End: Complemental strand, 22226318 - 22226256
Alignment:
Q  187 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaattta 249  Q
    ||||||||| ||| |||||||||||||||||||||  |||||| | | | |||||||||||||    
T  22226318 attctacttgaagatagtatttgtagcttttgattttagaattaacttttacacacaaattta 22226256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 113
Target Start/End: Complemental strand, 2937776 - 2937731
Alignment:
Q  68 ggtgtttggtttcacttttagatgccttaaaagtgcttttcaaatg 113  Q
    ||||||||||||||  |||||||||| || ||||||||||||||||    
T  2937776 ggtgtttggtttcatgtttagatgccatagaagtgcttttcaaatg 2937731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 358
Target Start/End: Original strand, 9818868 - 9818920
Alignment:
Q  308 agaatcaattcactcaa--ttaattcttgtcaaagcagaaccaaacatacact 358  Q
    |||||||||||||||||  | |||||||||||  |||||||||||||||||||    
T  9818868 agaatcaattcactcaaaataaattcttgtcaccgcagaaccaaacatacact 9818920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 358
Target Start/End: Complemental strand, 35757106 - 35757058
Alignment:
Q  310 aatcaattcactcaattaattcttgtcaaagcagaaccaaacatacact 358  Q
    |||||||||||||||| |||| |||||||   |||||||||||||||||    
T  35757106 aatcaattcactcaatcaatttttgtcaatatagaaccaaacatacact 35757058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 259
Target Start/End: Original strand, 42858115 - 42858183
Alignment:
Q  191 tacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaact 259  Q
    ||||| ||| ||| ||||| ||||||| |||| | |||||||| | ||||||||||||||| |||||||    
T  42858115 tacttgaagttaggatttggagcttttaattctataattgattttcacacacaaatttatagttcaact 42858183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 69 - 259
Target Start/End: Complemental strand, 31708435 - 31708249
Alignment:
Q  69 gtgtttggtttcacttttagatgccttaaaagtgcttttcaaatgtcaaaagcaatttacactctataaaattatatttgacannnnnnngagaaatcaa 168  Q
    |||||| ||||||||||||||||||| | ||||||||||||| || ||||||||| |   ||| ||   |||||| |||| ||       || |||||||    
T  31708435 gtgttttgtttcacttttagatgcctaataagtgcttttcaagtgccaaaagcaactctaactata---aattatgtttggcatttttt-gataaatcaa 31708340  T
Q  169 ttttgtagactaaaaacaattctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaact 259  Q
    ||| |  |||||||| ||||| ||||  |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  31708339 tttcgaggactaaaagcaattatactcgaagctactatttgtagcttttgattctagaattgattctaacacacaaatttataattcaact 31708249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 77 - 259
Target Start/End: Original strand, 31012914 - 31013093
Alignment:
Q  77 tttcacttttagatgccttaaaagtgcttttcaaatgtcaaaagcaatttacactctataaaattatatttgacannnnnnngagaaatcaattttgtag 176  Q
    |||||||| ||||||||||| ||||||||||||| || ||||||||| | | |||||||||| |||| |||| ||        | ||||||||||||  |    
T  31012914 tttcacttctagatgccttataagtgcttttcaagtgccaaaagcaactca-actctataaa-ttatgtttggcatttttca-ataaatcaattttgggg 31013010  T
Q  177 actaaaaacaattctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaact 259  Q
    ||||||| ||||||||||| || ||| |||||||||| ||||| || |||||||||||||||||||||||||| |||||||||    
T  31013011 actaaaagcaattctacttgaacctactatttgtagcctttgaatctagaattgattctaacacacaaatttagaattcaact 31013093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 185 - 257
Target Start/End: Original strand, 31492768 - 31492839
Alignment:
Q  185 caattctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaa 257  Q
    |||||||| || |||| | ||||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  31492768 caattctatttgaagcaactatttgtagcttttgattctagaattgatt-taacacacaaatttataattcaa 31492839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 361
Target Start/End: Complemental strand, 31708170 - 31708136
Alignment:
Q  327 aattcttgtcaaagcagaaccaaacatacactaaa 361  Q
    |||||||||||||||||||||||||||||||||||    
T  31708170 aattcttgtcaaagcagaaccaaacatacactaaa 31708136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 307 - 358
Target Start/End: Complemental strand, 42484452 - 42484399
Alignment:
Q  307 cagaatcaattcactca--attaattcttgtcaaagcagaaccaaacatacact 358  Q
    |||||||||||||||||  ||||||||||||||||||||||  |||||||||||    
T  42484452 cagaatcaattcactcataattaattcttgtcaaagcagaagtaaacatacact 42484399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 160 - 208
Target Start/End: Complemental strand, 24649472 - 24649424
Alignment:
Q  160 agaaatcaattttgtagactaaaaacaattctacttaaagctagtattt 208  Q
    ||||| |||||||||||||||||||||||| ||||||||| || |||||    
T  24649472 agaaaacaattttgtagactaaaaacaattttacttaaagttattattt 24649424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 352
Target Start/End: Complemental strand, 36550116 - 36550068
Alignment:
Q  304 agtcagaatcaattcactcaattaattcttgtcaaagcagaaccaaaca 352  Q
    ||||| |||||||||||||||| |||||||||||| ||||| |||||||    
T  36550116 agtcaaaatcaattcactcaatcaattcttgtcaatgcagatccaaaca 36550068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 187 - 259
Target Start/End: Complemental strand, 40147932 - 40147860
Alignment:
Q  187 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaact 259  Q
    ||||||||| ||||||| ||||| |||||||||||| ||||||||||  |||||   ||||||| ||||||||    
T  40147932 attctacttcaagctagaatttggagcttttgattctagaattgatttcaacacttgaatttatcattcaact 40147860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 148
Target Start/End: Original strand, 14021835 - 14021913
Alignment:
Q  69 gtgtttggtttcacttttagatgccttaaaagtgcttttcaaatgtcaaaagcaatttacactctataaaattatatttg 148  Q
    |||||||||||||||| |||||| |||| ||||| ||||||| || |||||||||||   |||| |||||||||| ||||    
T  14021835 gtgtttggtttcacttctagatg-cttagaagtgtttttcaagtgacaaaagcaattctaactccataaaattatgtttg 14021913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 259
Target Start/End: Complemental strand, 27266876 - 27266804
Alignment:
Q  187 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaact 259  Q
    ||||||||| ||||||| | ||||||||  ||||||||||||| ||| | |||| |||||||||  |||||||    
T  27266876 attctacttgaagctagaaattgtagctaatgattcaagaattaatttttacactcaaatttattgttcaact 27266804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 358
Target Start/End: Original strand, 31013167 - 31013218
Alignment:
Q  309 gaatcaattcactcaa--ttaattcttgtcaaagcagaaccaaacatacact 358  Q
    ||||||||||||||||  | |||||||| ||||||||||||||| |||||||    
T  31013167 gaatcaattcactcaaaatcaattcttgccaaagcagaaccaaatatacact 31013218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 32523404 - 32523360
Alignment:
Q  205 atttgtagcttttgattcaagaattgattctaacacacaaattta 249  Q
    |||||||||||||||||| | |||||||| | |||||||||||||    
T  32523404 atttgtagcttttgattctaaaattgatttttacacacaaattta 32523360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 207 - 251
Target Start/End: Complemental strand, 41596211 - 41596167
Alignment:
Q  207 ttgtagcttttgattcaagaattgattctaacacacaaatttata 251  Q
    ||||||||||||||| ||||||||||| | |||||||| ||||||    
T  41596211 ttgtagcttttgattaaagaattgatttttacacacaagtttata 41596167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 46853592 - 46853544
Alignment:
Q  211 agcttttgattcaagaattgattctaacacacaaatttataattcaact 259  Q
    |||||||||||| |||||||||| |||||| |||||||||  |||||||    
T  46853592 agcttttgattctagaattgattttaacactcaaatttattgttcaact 46853544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 181 - 259
Target Start/End: Complemental strand, 52965942 - 52965864
Alignment:
Q  181 aaaacaattctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaact 259  Q
    ||||| ||||||||| ||| || ||||| ||||||||||||| | |||||||||||||||| |||||||||||||||||    
T  52965942 aaaacgattctacttgaagttactatttatagcttttgattctaaaattgattctaacacataaatttataattcaact 52965864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 162 - 260
Target Start/End: Original strand, 38716545 - 38716636
Alignment:
Q  162 aaatcaattttgtagactaaaaacaattctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaactt 260  Q
    |||||||||||| ||| |||||||||||||| || |||||| |||||||||||||||||       |||||||||||  ||||||||||||||||||||    
T  38716545 aaatcaattttggagattaaaaacaattctagttgaagctactatttgtagcttttgat-------ttgattctaacttacaaatttataattcaactt 38716636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 187 - 259
Target Start/End: Complemental strand, 32818452 - 32818380
Alignment:
Q  187 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaact 259  Q
    |||||| || ||||||| |||||||||||||||||| |||||||||| |  |||||||||||||| |||||||    
T  32818452 attctatttgaagctagaatttgtagcttttgattctagaattgatttttgcacacaaatttatagttcaact 32818380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 45011895 - 45011944
Alignment:
Q  205 atttgtagcttttgattcaagaattgattctaacacacaaatttataatt 254  Q
    |||||||||||||||||| |||||||||| | ||||||||||||||||||    
T  45011895 atttgtagcttttgattctagaattgattttcacacacaaatttataatt 45011944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 187 - 251
Target Start/End: Complemental strand, 8604704 - 8604640
Alignment:
Q  187 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttata 251  Q
    ||||||||| ||||||  |||||||||||| ||||| |||||||||| | |||||||||||||||    
T  8604704 attctacttgaagctaagatttgtagctttcgattctagaattgattttcacacacaaatttata 8604640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 191 - 251
Target Start/End: Original strand, 35065070 - 35065130
Alignment:
Q  191 tacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttata 251  Q
    ||||| ||||||||||||||  |||||||||| |||||||||| | |||||||||||||||    
T  35065070 tacttgaagctagtatttgtgacttttgattctagaattgatttttacacacaaatttata 35065130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 304 - 361
Target Start/End: Complemental strand, 20712769 - 20712712
Alignment:
Q  304 agtcagaatcaattcactcaattaattcttgtcaaagcagaaccaaacatacactaaa 361  Q
    |||| ||||||||||||||||  ||||||| ||| |||||||||||||||| ||||||    
T  20712769 agtcggaatcaattcactcaaccaattcttatcacagcagaaccaaacataaactaaa 20712712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 250
Target Start/End: Original strand, 1048720 - 1048783
Alignment:
Q  187 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttat 250  Q
    ||||||||||||| ||| |||| |||||||| |||| | |||||||||| |||| |||||||||    
T  1048720 attctacttaaagttagaatttatagcttttaattctataattgattcttacactcaaatttat 1048783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 257
Target Start/End: Original strand, 53655146 - 53655243
Alignment:
Q  159 gagaaatcaattttgtagactaaaaacaattctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaa 257  Q
    ||||||||||||| | |||||||||||| |||||||| |||||| |||||  || ||| ||||  | |||  ||| ||||||||||||||||| |||||    
T  53655146 gagaaatcaattt-gaagactaaaaacatttctacttgaagctattatttaaagatttggattttaaaatcaattttaacacacaaatttatagttcaa 53655243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 258
Target Start/End: Complemental strand, 21691276 - 21691223
Alignment:
Q  205 atttgtagcttttgattcaagaattgattctaacacacaaatttataattcaac 258  Q
    |||||||||||||| ||  |||||||||| | ||||||||||||||| ||||||    
T  21691276 atttgtagcttttggttgtagaattgattttcacacacaaatttatagttcaac 21691223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 257
Target Start/End: Complemental strand, 44279056 - 44278979
Alignment:
Q  180 aaaaacaattctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaa 257  Q
    |||| ||||||||||| || ||| ||| |||| ||||| |||  | |||||||||||||||| |||||| ||||||||    
T  44279056 aaaatcaattctacttgaaactactatatgtatctttttattttaaaattgattctaacacataaatttttaattcaa 44278979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 1616394 - 1616449
Alignment:
Q  187 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacaca 243  Q
    ||||||||||| ||||  |||||||||||||||||| |||||||||||  |||||||    
T  1616394 attctacttaa-gctacaatttgtagcttttgattctagaattgattcccacacaca 1616449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 125
Target Start/End: Original strand, 6463888 - 6463944
Alignment:
Q  69 gtgtttggtttcacttttagatgccttaaaagtgcttttcaaatgtcaaaagcaatt 125  Q
    |||||| |||||||||||| |||||| | ||||||||||||| || ||||| |||||    
T  6463888 gtgttttgtttcacttttaaatgcctcagaagtgcttttcaattggcaaaaacaatt 6463944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 259
Target Start/End: Original strand, 26617471 - 26617543
Alignment:
Q  187 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaact 259  Q
    ||||||||| ||||||| || ||||||||||||||  | |||||||| | | | | |||||||||||||||||    
T  26617471 attctacttgaagctagaatctgtagcttttgattataaaattgatttttatagataaatttataattcaact 26617543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 251
Target Start/End: Original strand, 30357515 - 30357579
Alignment:
Q  187 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttata 251  Q
    ||||||||| |||||   |||||||||||||||||  | |||||||| | |||||||||||||||    
T  30357515 attctacttgaagctgtgatttgtagcttttgattatataattgatttttacacacaaatttata 30357579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 261
Target Start/End: Original strand, 33843990 - 33844054
Alignment:
Q  197 aagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaactta 261  Q
    ||||||| | ||| |||||||||||| | |||||||| |||||| |||||||||  |||||||||    
T  33843990 aagctagaaattggagcttttgattctaaaattgattttaacactcaaatttattgttcaactta 33844054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 110
Target Start/End: Original strand, 53655047 - 53655095
Alignment:
Q  62 taagagggtgtttggtttcacttttagatgccttaaaagtgcttttcaa 110  Q
    ||||||| |||||||||||||| ||||||| |||| ||||| |||||||    
T  53655047 taagaggatgtttggtttcactcttagatgtcttataagtgtttttcaa 53655095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 187 - 259
Target Start/End: Complemental strand, 41386897 - 41386825
Alignment:
Q  187 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaact 259  Q
    ||||||||| ||||||| ||||||||||||| |||| |||||||||  | |||||||||||||||||||||||    
T  41386897 attctacttgaagctaggatttgtagcttttaattctagaattgatatttacacacaaatttataattcaact 41386825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 168 - 249
Target Start/End: Original strand, 1442557 - 1442638
Alignment:
Q  168 attttgtagactaaaaacaattctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaattta 249  Q
    |||||| | ||||||| ||||||||||| ||| || ||| | ||||||||||||| | |||||||||||| |||||||||||    
T  1442557 attttggatactaaaagcaattctacttgaagttattatgtatagcttttgattctataattgattctaaaacacaaattta 1442638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 187 - 259
Target Start/End: Original strand, 27571865 - 27571937
Alignment:
Q  187 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaact 259  Q
    ||||||||| ||| ||| | ||| |||||||||||| |||||||||| |||||| ||| ||||| ||||||||    
T  27571865 attctacttgaagttagaaattggagcttttgattctagaattgattttaacactcaagtttattattcaact 27571937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 259
Target Start/End: Original strand, 32295228 - 32295259
Alignment:
Q  228 ttgattctaacacacaaatttataattcaact 259  Q
    ||||||||||||||||||||||||||||||||    
T  32295228 ttgattctaacacacaaatttataattcaact 32295259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 240
Target Start/End: Complemental strand, 28725130 - 28725081
Alignment:
Q  191 tacttaaagctagtatttgtagcttttgattcaagaattgattctaacac 240  Q
    ||||| ||||||| |||||||||||||||||| | |||||||||| ||||    
T  28725130 tacttgaagctagaatttgtagcttttgattctataattgattctcacac 28725081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 257
Target Start/End: Complemental strand, 42816524 - 42816480
Alignment:
Q  213 cttttgattcaagaattgattctaacacacaaatttataattcaa 257  Q
    ||||| |||| |||||||||| | |||||||||||||||||||||    
T  42816524 cttttaattctagaattgattttcacacacaaatttataattcaa 42816480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 185 - 259
Target Start/End: Complemental strand, 5533115 - 5533041
Alignment:
Q  185 caattctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaact 259  Q
    ||||||||||| |||||| |||||||||||||||||||   ||||||||  |||||| |||||||||||||||||    
T  5533115 caattctacttgaagctactatttgtagcttttgattcttaaattgatttaaacacataaatttataattcaact 5533041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 187 - 250
Target Start/End: Original strand, 42982547 - 42982610
Alignment:
Q  187 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttat 250  Q
    ||||||||| ||||||| | |||||||||||||||| |||||||||| | ||||||||||||||    
T  42982547 attctacttgaagctagaaattgtagcttttgattccagaattgatttttacacacaaatttat 42982610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 187 - 259
Target Start/End: Original strand, 43501128 - 43501198
Alignment:
Q  187 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaact 259  Q
    ||||||||| || |||| |||||||||||||||||  |||||||||||||  ||||||| |||||||||||||    
T  43501128 attctacttgaaactaggatttgtagcttttgattttagaattgattcta--acacaaaattataattcaact 43501198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 260
Target Start/End: Original strand, 17281383 - 17281485
Alignment:
Q  159 gagaaatcaattttgtag-actaaaaacaattctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaa 257  Q
    ||||||||||||||  || ||| ||||||||| ||||| |||||| ||| |||||||||  |||  | |||||||| ||| |||||||||||||||| ||    
T  17281383 gagaaatcaatttttgaggacttaaaacaattatacttgaagctactatctgtagctttcaattttaaaattgattttaatacacaaatttataattgaa 17281482  T
Q  258 ctt 260  Q
    |||    
T  17281483 ctt 17281485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 187 - 249
Target Start/End: Original strand, 42740980 - 42741042
Alignment:
Q  187 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaattta 249  Q
    ||||||||| ||||||  |||||||||||||||||| |||||||||| | |||| ||||||||    
T  42740980 attctacttgaagctaagatttgtagcttttgattctagaattgatttttacactcaaattta 42741042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 224 - 261
Target Start/End: Original strand, 31415375 - 31415412
Alignment:
Q  224 agaattgattctaacacacaaatttataattcaactta 261  Q
    |||||||||||| |||||||||||||||||||||||||    
T  31415375 agaattgattcttacacacaaatttataattcaactta 31415412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 233
Target Start/End: Original strand, 30503212 - 30503258
Alignment:
Q  187 attctacttaaagctagtatttgtagcttttgattcaagaattgatt 233  Q
    ||||||||| |||| || ||| |||||||||||||||||||||||||    
T  30503212 attctacttgaagccaggattcgtagcttttgattcaagaattgatt 30503258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 259
Target Start/End: Complemental strand, 33019228 - 33019166
Alignment:
Q  197 aagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaact 259  Q
    ||||||| |||||||||||||| ||  |||||||||| | ||||| ||||||||| |||||||    
T  33019228 aagctagaatttgtagcttttggttttagaattgattttcacacataaatttatagttcaact 33019166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 187 - 259
Target Start/End: Complemental strand, 4662985 - 4662913
Alignment:
Q  187 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaact 259  Q
    ||||||||| ||||||| |||||||||||||| ||| |||||||||| | |||||||||| |||| |||||||    
T  4662985 attctacttgaagctaggatttgtagcttttgtttctagaattgatttttacacacaaatgtatagttcaact 4662913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 187 - 259
Target Start/End: Complemental strand, 13384736 - 13384664
Alignment:
Q  187 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaact 259  Q
    |||||| || ||||||  |||||||||||||||||| |||||||||| | ||||||||||||||| |||||||    
T  13384736 attctatttgaagctaaaatttgtagcttttgattctagaattgattttcacacacaaatttatagttcaact 13384664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 187 - 259
Target Start/End: Original strand, 32927895 - 32927967
Alignment:
Q  187 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaact 259  Q
    ||||||||| ||||||| |||||||||||||||||  |||||| ||| | ||||||||||||||| |||||||    
T  32927895 attctacttgaagctaggatttgtagcttttgattatagaattcatttttacacacaaatttatagttcaact 32927967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 187 - 261
Target Start/End: Original strand, 35494993 - 35495067
Alignment:
Q  187 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaactta 261  Q
    ||||||| | ||||||| |||||||||||||||||| ||||||| || | |||||||||| |||| |||||||||    
T  35494993 attctacatgaagctaggatttgtagcttttgattctagaattgttttttacacacaaatctatagttcaactta 35495067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 187 - 259
Target Start/End: Original strand, 38868501 - 38868573
Alignment:
Q  187 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaact 259  Q
    ||||||||| ||||||  |||||||||||||| ||| | |||||||| | ||||||||||||||| |||||||    
T  38868501 attctacttgaagctaagatttgtagcttttggttctataattgattttcacacacaaatttatagttcaact 38868573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 188 - 259
Target Start/End: Complemental strand, 26100227 - 26100156
Alignment:
Q  188 ttctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaact 259  Q
    ||||| || ||||||| |||||||||||||||||| | |||||||| | ||||||||||||||  |||||||    
T  26100227 ttctatttgaagctaggatttgtagcttttgattctataattgatttttacacacaaatttatggttcaact 26100156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 187 - 259
Target Start/End: Complemental strand, 15677898 - 15677825
Alignment:
Q  187 attctacttaaagctagtatttgtagcttttgattcaagaattga-ttctaacacacaaatttataattcaact 259  Q
    ||||||||| ||||||| |||| ||||||||||||  |||||||| || | ||||||||||||||| |||||||    
T  15677898 attctacttgaagctaggatttatagcttttgattatagaattgattttttacacacaaatttatagttcaact 15677825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 187 - 259
Target Start/End: Original strand, 37684408 - 37684480
Alignment:
Q  187 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaact 259  Q
    ||||||||| ||| ||| |||||| ||||||||||| | |||||||| |||  || |||||||||||||||||    
T  37684408 attctacttgaagttaggatttgtggcttttgattctaaaattgattttaatgcaaaaatttataattcaact 37684480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 251
Target Start/End: Complemental strand, 32994324 - 32994260
Alignment:
Q  187 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttata 251  Q
    ||||||||| ||||||  |||| |||||||||| || |||||||||| | | |||||||||||||    
T  32994324 attctacttgaagctatgatttctagcttttgagtctagaattgatttttatacacaaatttata 32994260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 159 - 246
Target Start/End: Complemental strand, 10669573 - 10669486
Alignment:
Q  159 gagaaatcaattttgtagactaaaaacaattctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaat 246  Q
    |||| |||||||||| |||||||||| || ||||||| ||| || ||||||||| |||| ||||  ||||||||||||||||| ||||    
T  10669573 gagagatcaattttggagactaaaaataaatctacttgaaggtactatttgtagttttttattctggaattgattctaacacaaaaat 10669486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 187 - 251
Target Start/End: Original strand, 4910911 - 4910975
Alignment:
Q  187 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttata 251  Q
    ||||||||| ||||||  |||||||||||||||||| |||||||||| | ||| |||||||||||    
T  4910911 attctacttgaagctatgatttgtagcttttgattctagaattgattttcacatacaaatttata 4910975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 186 - 257
Target Start/End: Complemental strand, 6654173 - 6654102
Alignment:
Q  186 aattctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaa 257  Q
    |||||||||| ||||||| ||||||||||||| |||| ||| |||||| | ||||| ||||||||| |||||    
T  6654173 aattctacttgaagctaggatttgtagcttttaattctagatttgattttcacacagaaatttatagttcaa 6654102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 204 - 259
Target Start/End: Complemental strand, 46355 - 46298
Alignment:
Q  204 tatttgtagcttttgattcaagaattgattctaacacacaaa--tttataattcaact 259  Q
    ||||||||||||||||||| ||||| |||||||||| |||||  ||||||||||||||    
T  46355 tatttgtagcttttgattctagaatagattctaacaaacaaatttttataattcaact 46298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 187 - 259
Target Start/End: Complemental strand, 1485228 - 1485156
Alignment:
Q  187 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaact 259  Q
    ||||||||| || |||| | ||| |||||||||||| |||||||||| |||||| |||||||||  |||||||    
T  1485228 attctacttgaatctagaaattggagcttttgattctagaattgattttaacactcaaatttattgttcaact 1485156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 187 - 251
Target Start/End: Complemental strand, 7952791 - 7952727
Alignment:
Q  187 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttata 251  Q
    ||||||||| |||| || |||||||||||||||||| |||||||  | | |||||||||||||||    
T  7952791 attctacttgaagcgaggatttgtagcttttgattctagaattgggtttcacacacaaatttata 7952727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 207 - 259
Target Start/End: Original strand, 17225875 - 17225927
Alignment:
Q  207 ttgtagcttttgattcaagaattgattctaacacacaaatttataattcaact 259  Q
    |||||||||||||||| |||||||||| | ||| ||||||||||| |||||||    
T  17225875 ttgtagcttttgattctagaattgatttttacatacaaatttatagttcaact 17225927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 187 - 259
Target Start/End: Original strand, 25195853 - 25195925
Alignment:
Q  187 attctacttaaagctagtatttgtagcttttgattcaagaattgattctaacacacaaatttataattcaact 259  Q
    |||||| ||||| |||| |||| ||||||||||||| |||||||| |   ||||||||||||||| |||||||    
T  25195853 attctaattaaaactaggatttatagcttttgattctagaattgaattgtacacacaaatttatagttcaact 25195925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 233
Target Start/End: Complemental strand, 765468 - 765422
Alignment:
Q  187 attctacttaaagctagtatttgtagcttttgattcaagaattgatt 233  Q
    ||||||||| ||||||  |||||||||||||||||| ||||||||||    
T  765468 attctacttgaagctatgatttgtagcttttgattctagaattgatt 765422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 34027475 - 34027427
Alignment:
Q  211 agcttttgattcaagaattgattctaacacacaaatttataattcaact 259  Q
    |||||||||||| |||||||||| | |||| ||||||||| ||||||||    
T  34027475 agcttttgattctagaattgatttttacactcaaatttattattcaact 34027427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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