View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18318_high_18 (Length: 392)
Name: NF18318_high_18
Description: NF18318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18318_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 23 - 377
Target Start/End: Original strand, 2795821 - 2796175
Alignment:
| Q |
23 |
agccacaacataaccactttacaaaaatccaaagttcatttggcnnnnnnnattttgcaaaaaacaactttaattaaacatatatatcatttaaaatgaa |
122 |
Q |
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| T |
2795821 |
agccacaacataaccactttacaaaaatccaaagttcatttgccttttttttttttgcaaaaaacaactttaattaaacatatatatcatttaaaatgaa |
2795920 |
T |
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| Q |
123 |
ctaggagattattaaagtttgtttagtgtgtgaaaatattttatgttttcatattctaaaatatgtgttcattttaactcattgataaaaaatcattgtg |
222 |
Q |
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| T |
2795921 |
caaggagattattaaagtctgtttagtgtgtgaaaatattttatgttttcatattctaaaatatgtgttcattttaactcattgataaaaaatcattgtg |
2796020 |
T |
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| Q |
223 |
atggagatgagaatggataggatcatttcaggaatttcatttgaacatgttagacttggtaaggtgtctccctcaacgaaccctaatattaaagcgggca |
322 |
Q |
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| T |
2796021 |
atggagatgagaatggataggatcacttcaggaatttcatttcaacatgttagactcggtaaggtgtctccctcaacgaactctaatattaaagcgggct |
2796120 |
T |
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| Q |
323 |
ctaatcacacaaataactactgttttgtctaagattataaaaacaataattaaat |
377 |
Q |
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| T |
2796121 |
ctaatcacacaaataactactgttttgtctaagattataaaaacaataattaaat |
2796175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 326 - 371
Target Start/End: Original strand, 2789485 - 2789530
Alignment:
| Q |
326 |
atcacacaaataactactgttttgtctaagattataaaaacaataa |
371 |
Q |
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| T |
2789485 |
atcacacaaataactacggttttgtgtaagattataaaaacaataa |
2789530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 151 - 201
Target Start/End: Complemental strand, 48440116 - 48440068
Alignment:
| Q |
151 |
tgtgaaaatattttatgttttcatattctaaaatatgtgttcattttaact |
201 |
Q |
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| T |
48440116 |
tgtgaaaacattttatgtt--catcttctaaaatatgtgttcattttaact |
48440068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 201
Target Start/End: Original strand, 11101372 - 11101420
Alignment:
| Q |
153 |
tgaaaatattttatgttttcatattctaaaatatgtgttcattttaact |
201 |
Q |
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| T |
11101372 |
tgaaaatatttgatgttttcaatttctaaaatatgtgttcatttcaact |
11101420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 201
Target Start/End: Complemental strand, 44651612 - 44651562
Alignment:
| Q |
151 |
tgtgaaaatattttatgttttcatattctaaaatatgtgttcattttaact |
201 |
Q |
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| T |
44651612 |
tgtgaaaacattttatatttttattttctaaaatatgtgctcattttaact |
44651562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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