View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18318_high_23 (Length: 312)
Name: NF18318_high_23
Description: NF18318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18318_high_23 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 11 - 312
Target Start/End: Complemental strand, 19091518 - 19091219
Alignment:
| Q |
11 |
atacttacatctgaagaaggtttgggatacttaatcaagaggcacggttcttgtatattgaggaatctagaagttattcttctagttgattgacgagggt |
110 |
Q |
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| T |
19091518 |
atacttacatctgaagaaggtttaggatacttaatcaagaggcacggttcttgtatattgaggaatctagaagttattcttctagttgattgatgagggt |
19091419 |
T |
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| Q |
111 |
ttagaatacttaactcaaggctgcaaatatgcctaaatgattccactgcttaccgcaattgttgtatatgagtgtgtccatttttaaagtttattttaca |
210 |
Q |
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| T |
19091418 |
ttagaatacttaactcaaggctgcaaatatgcctaaatgattccactgcttaccgcaattgttgtatatgagtgtatccatttttaaagtttattttaca |
19091319 |
T |
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| Q |
211 |
agacttgcattgcttctctatagactattggtcatacgtaattttacacacaaggcgttttcttgtgtagatctcagaaccttttcgagccaccctagtt |
310 |
Q |
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| T |
19091318 |
agacttgcattgcttctctatagactattgatcatacgtaattttacacacaaggcgttttcttgtgtaga--tcagaacctttttgagtcatcctggtt |
19091221 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 247
Target Start/End: Complemental strand, 3584783 - 3584750
Alignment:
| Q |
214 |
cttgcattgcttctctatagactattggtcatac |
247 |
Q |
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| T |
3584783 |
cttgcattggttctctatagactattggtcatac |
3584750 |
T |
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