View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18318_high_25 (Length: 302)

Name: NF18318_high_25
Description: NF18318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18318_high_25
NF18318_high_25
[»] chr5 (6 HSPs)
chr5 (80-291)||(25699334-25699546)
chr5 (1-87)||(25701592-25701678)
chr5 (67-147)||(5539072-5539152)
chr5 (221-267)||(21485097-21485143)
chr5 (181-290)||(25699286-25699396)
chr5 (125-161)||(21485103-21485139)
[»] chr3 (3 HSPs)
chr3 (67-158)||(20000096-20000187)
chr3 (68-157)||(8821054-8821143)
chr3 (63-129)||(32633927-32633993)
[»] chr8 (2 HSPs)
chr8 (67-157)||(38810104-38810194)
chr8 (68-148)||(1807272-1807352)
[»] chr1 (4 HSPs)
chr1 (74-147)||(42606295-42606368)
chr1 (67-158)||(3400013-3400104)
chr1 (67-146)||(27120882-27120961)
chr1 (220-276)||(28080161-28080217)
[»] chr4 (5 HSPs)
chr4 (74-158)||(22466360-22466444)
chr4 (67-158)||(20634515-20634606)
chr4 (222-265)||(16739237-16739280)
chr4 (69-147)||(36010930-36011008)
chr4 (76-158)||(40287351-40287433)
[»] chr7 (1 HSPs)
chr7 (106-158)||(18573158-18573210)
[»] chr2 (2 HSPs)
chr2 (107-159)||(12530192-12530244)
chr2 (245-283)||(42494426-42494464)


Alignment Details
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 80 - 291
Target Start/End: Complemental strand, 25699546 - 25699334
Alignment:
Q  80 ataccatgtggactctaccatacaccgactattcaacgtgtacaactcaacttgatcgttcaggtcacaggagctccacattattcaacatacatatctc 179  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||| |||    
T  25699546 ataccatgtggactctactatataccgactattcaacgtgtacaacttaacttgatcgttcaggtcacaagagctccacattattcaacatgcatagctc 25699447  T
Q  180 ggcttgatcgctcaggtcatatgagctccacctacaata-acctagctcagcttgattgttcaggtcacatgagctcgaccttcaacatgcgtaactcag 278  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  25699446 ggcttgatcgctcaggtcatatgagctccacctacaatatgcctagctcagcttgatcattcaggtcacatgagctcgaccttcaacatgcgtaactcag 25699347  T
Q  279 cttgattgttcat 291  Q
    |||||||||||||    
T  25699346 cttgattgttcat 25699334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 25701678 - 25701592
Alignment:
Q  1 agagtggctattttggatcttcatttcaatggacttcattggtggaatcaaattcctacttagaagggtatgaaggaccataccatg 87  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  25701678 agagtggctattttggatcttcatttcaatggacttcattggtggaatcaaattcctacttagacgggtatgaaggaccataccatg 25701592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 67 - 147
Target Start/End: Complemental strand, 5539152 - 5539072
Alignment:
Q  67 ggtatgaaggaccataccatgtggactctaccatacaccgactattcaacgtgtacaactcaacttgatcgttcaggtcac 147  Q
    |||||| |||||||||||| ||||||||| | |||||  ||||||||||| ||||||||||||||||||| ||||||||||    
T  5539152 ggtatggaggaccataccacgtggactctcctatacattgactattcaacatgtacaactcaacttgatcattcaggtcac 5539072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 267
Target Start/End: Complemental strand, 21485143 - 21485097
Alignment:
Q  221 ctagctcagcttgattgttcaggtcacatgagctcgaccttcaacat 267  Q
    ||||||||||||||| ||||||||||||||||||| || ||||||||    
T  21485143 ctagctcagcttgatcgttcaggtcacatgagctccacattcaacat 21485097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 290
Target Start/End: Complemental strand, 25699396 - 25699286
Alignment:
Q  181 gcttgatcgctcaggtcatatgagctccacctacaataacc-tagctcagcttgattgttcaggtcacatgagctcgaccttcaacatgcgtaactcagc 279  Q
    ||||||||  |||||||| |||||||| |||| ||| |  | || ||||||||||||||||| ||||||||||||||| |||| ||||| ||| ||  ||    
T  25699396 gcttgatcattcaggtcacatgagctcgaccttcaacatgcgtaactcagcttgattgttcatgtcacatgagctcgatcttccacatgtgtagcttggc 25699297  T
Q  280 ttgattgttca 290  Q
    ||||| |||||    
T  25699296 ttgatcgttca 25699286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 161
Target Start/End: Complemental strand, 21485139 - 21485103
Alignment:
Q  125 ctcaacttgatcgttcaggtcacaggagctccacatt 161  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  21485139 ctcagcttgatcgttcaggtcacatgagctccacatt 21485103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 67 - 158
Target Start/End: Original strand, 20000096 - 20000187
Alignment:
Q  67 ggtatgaaggaccataccatgtggactctaccatacaccgactattcaacgtgtacaactcaacttgatcgttcaggtcacaggagctccac 158  Q
    |||||| |||||||||||| ||||||||    |||||  ||||||||||| ||||||||||||||||||||||||||||||  |||||||||    
T  20000096 ggtatggaggaccataccacgtggactcctatatacattgactattcaacatgtacaactcaacttgatcgttcaggtcacgtgagctccac 20000187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 157
Target Start/End: Complemental strand, 8821143 - 8821054
Alignment:
Q  68 gtatgaaggaccataccatgtggactctaccatacaccgactattcaacgtgtacaactcaacttgatcgttcaggtcacaggagctcca 157  Q
    ||||| |||||||| ||| ||||||||| | |||||  ||||||||| | | ||||||||||| |||||||||| |||||  ||||||||    
T  8821143 gtatggaggaccatgccacgtggactctcctatacattgactattcaccatatacaactcaacctgatcgttcaagtcacgagagctcca 8821054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 32633927 - 32633993
Alignment:
Q  63 gaagggtatgaaggaccataccatgtggactctaccatacaccgactattcaacgtgtacaactcaa 129  Q
    |||||||||| | |||||||||||||||||| ||  |||||  ||||||||||| ||| ||||||||    
T  32633927 gaagggtatggaagaccataccatgtggactttattatacattgactattcaacatgtccaactcaa 32633993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 67 - 157
Target Start/End: Complemental strand, 38810194 - 38810104
Alignment:
Q  67 ggtatgaaggaccataccatgtggactctaccatacaccgactattcaacgtgtacaactcaacttgatcgttcaggtcacaggagctcca 157  Q
    |||||| ||||||||| || ||||||||| | |||||  ||||||||||| |||||| |||||||||||||||||||||||  ||||||||    
T  38810194 ggtatggaggaccatatcacgtggactctcctatacattgactattcaacatgtacagctcaacttgatcgttcaggtcacgtgagctcca 38810104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 68 - 148
Target Start/End: Original strand, 1807272 - 1807352
Alignment:
Q  68 gtatgaaggaccataccatgtggactctaccatacaccgactattcaacgtgtacaactcaacttgatcgttcaggtcaca 148  Q
    ||||| |||||||||||| ||||||||| | ||||   ||||||||||| |||||| ||||| |||||| |||||||||||    
T  1807272 gtatgtaggaccataccacgtggactcttctataccttgactattcaacatgtacatctcaatttgatcattcaggtcaca 1807352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 74 - 147
Target Start/End: Original strand, 42606295 - 42606368
Alignment:
Q  74 aggaccataccatgtggactctaccatacaccgactattcaacgtgtacaactcaacttgatcgttcaggtcac 147  Q
    |||||||||||| ||||||||| | |||||  ||||||||||  ||||||||||||||||||||||||||||||    
T  42606295 aggaccataccacgtggactctcctatacattgactattcaatatgtacaactcaacttgatcgttcaggtcac 42606368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 67 - 158
Target Start/End: Original strand, 3400013 - 3400104
Alignment:
Q  67 ggtatgaaggaccataccatgtggactctaccatacaccgactattcaacgtgtacaactcaacttgatcgttcaggtcacaggagctccac 158  Q
    |||||| |||||||||||| |||||||||   |||||  ||||||||||| ||||||||| | ||||||||||||||||||  |||||||||    
T  3400013 ggtatggaggaccataccacgtggactcttatatacattgactattcaacatgtacaacttagcttgatcgttcaggtcacgtgagctccac 3400104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 67 - 146
Target Start/End: Original strand, 27120882 - 27120961
Alignment:
Q  67 ggtatgaaggaccataccatgtggactctaccatacaccgactattcaacgtgtacaactcaacttgatcgttcaggtca 146  Q
    |||||| |||||||||||| ||||||||| |  ||||  ||||||||||| ||||||||| | ||||||| || ||||||    
T  27120882 ggtatggaggaccataccacgtggactctcctttacattgactattcaacatgtacaacttagcttgatcattaaggtca 27120961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 276
Target Start/End: Original strand, 28080161 - 28080217
Alignment:
Q  220 cctagctcagcttgattgttcaggtcacatgagctcgaccttcaacatgcgtaactc 276  Q
    ||||| || ||||||||||||| ||||| ||||||  ||||||||||||| ||||||    
T  28080161 cctagatcggcttgattgttcatgtcacttgagcttcaccttcaacatgcttaactc 28080217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 74 - 158
Target Start/End: Complemental strand, 22466444 - 22466360
Alignment:
Q  74 aggaccataccatgtggactctaccatacaccgactattcaacgtgtacaactcaacttgatcgttcaggtcacaggagctccac 158  Q
    ||||||||||||  |||||| ||| |||||  ||||||||||| | | |||||||||||||| |||||||||||||||| |||||    
T  22466444 aggaccataccacatggactttactatacattgactattcaacatatccaactcaacttgattgttcaggtcacaggagatccac 22466360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 158
Target Start/End: Original strand, 20634515 - 20634606
Alignment:
Q  67 ggtatgaaggaccataccatgtggactctaccatacaccgactattcaacgtgtacaactcaacttgatcgttcaggtcacaggagctccac 158  Q
    |||||| ||||||||||||  |||||||| | |||||  || |||||||| |||||||||||  |||||||||||||||||  |||||||||    
T  20634515 ggtatggaggaccataccacatggactctcctatacattgaatattcaacatgtacaactcagtttgatcgttcaggtcacgtgagctccac 20634606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 265
Target Start/End: Complemental strand, 16739280 - 16739237
Alignment:
Q  222 tagctcagcttgattgttcaggtcacatgagctcgaccttcaac 265  Q
    |||| ||||||||| ||||||||||||||||||| |||||||||    
T  16739280 tagcccagcttgatcgttcaggtcacatgagctctaccttcaac 16739237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 147
Target Start/End: Complemental strand, 36011008 - 36010930
Alignment:
Q  69 tatgaaggaccataccatgtggactctaccatacaccgactattcaacgtgtacaactcaacttgatcgttcaggtcac 147  Q
    |||| |||||||||||| |||||| ||   |||||  ||||||||||| |||||| || |||||||||||| |||||||    
T  36011008 tatggaggaccataccacgtggacccttttatacattgactattcaacatgtacagcttaacttgatcgtttaggtcac 36010930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 158
Target Start/End: Complemental strand, 40287433 - 40287351
Alignment:
Q  76 gaccataccatgtggactctaccatacaccgactattcaacgtgtacaactcaacttgatcgttcaggtcacaggagctccac 158  Q
    ||||||||||  |||||||| | |||||   |||||||||| |||||||||||  |||||| ||||||||||  |||||||||    
T  40287433 gaccataccacatggactcttctatacattcactattcaacatgtacaactcagtttgatcattcaggtcacgtgagctccac 40287351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 18573158 - 18573210
Alignment:
Q  106 gactattcaacgtgtacaactcaacttgatcgttcaggtcacaggagctccac 158  Q
    ||||||||||| ||||||||||| ||||||||| ||||||||  |||||||||    
T  18573158 gactattcaacatgtacaactcagcttgatcgtacaggtcacgtgagctccac 18573210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 159
Target Start/End: Complemental strand, 12530244 - 12530192
Alignment:
Q  107 actattcaacgtgtacaactcaacttgatcgttcaggtcacaggagctccaca 159  Q
    |||||||||| |||||| |||| ||||||||||||||||||  ||||||||||    
T  12530244 actattcaacatgtacagctcagcttgatcgttcaggtcacgtgagctccaca 12530192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Complemental strand, 42494464 - 42494426
Alignment:
Q  245 cacatgagctcgaccttcaacatgcgtaactcagcttga 283  Q
    ||||||||||| |||||||||||||||| ||||||||||    
T  42494464 cacatgagctccaccttcaacatgcgtagctcagcttga 42494426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University