View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18318_high_29 (Length: 261)

Name: NF18318_high_29
Description: NF18318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18318_high_29
NF18318_high_29
[»] chr1 (7 HSPs)
chr1 (1-243)||(14668597-14668840)
chr1 (1-152)||(14653200-14653357)
chr1 (1-152)||(14662991-14663148)
chr1 (160-243)||(14707079-14707162)
chr1 (150-217)||(14653382-14653449)
chr1 (150-217)||(14663173-14663240)
chr1 (1-51)||(14707193-14707243)
[»] chr2 (1 HSPs)
chr2 (1-226)||(30732387-30732602)


Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 14668597 - 14668840
Alignment:
Q  1 acttcattatacc-aaatattgtagttcctttatttcctgattaaaattctgcaacacacagacaaaaaattctgctccagtccgagagtgtgaagtatg 99  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||    
T  14668597 acttcattatacccaaatattgtagttcctttatttcctgattaaaattctgcaacacgcagacaaaaaattatgctccagtccgagagtgcgaagtatg 14668696  T
Q  100 ctgttgaatgaaatttcgaagaccagctctacgccaacaaagctcactgttatcttcgataccattttcgcataaggcacaattcggaaggtaaactagt 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14668697 ctgttgaatgaaatttcgaagaccagctctacgccaacaaagctcactgttatcttcgataccattttcgcataaggcacaattcggaaggtaaaatagt 14668796  T
Q  200 tgtcaatgtaacaaaaatacaatgaagtttagacgtaaatcaac 243  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  14668797 tgtcaatgtaacaaaaatacaatgaagtttagacataaatcaac 14668840  T

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Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 14653200 - 14653357
Alignment:
Q  1 acttcattataccaaatattgtagttcctttatttcctgattaaaattctgcaacacacagacaaaaaattctgctccagtccgagagtgtgaagt---- 96  Q
    ||||||||||||||||| ||||  |||| |||| ||||||||||||||||||||||  |||  ||||| ||||| |||||||||||||||||||||        
T  14653200 acttcattataccaaattttgtttttccattatatcctgattaaaattctgcaacatgcaggaaaaaatttctgttccagtccgagagtgtgaagtgaag 14653299  T
Q  97 -atgctgttgaat-gaaatttcgaagaccagctctacgccaacaaagctcactgttat 152  Q
     |||||| |||||  ||||| | |||||||||||||||||||||||||||||||||||    
T  14653300 catgctgctgaataaaaattccaaagaccagctctacgccaacaaagctcactgttat 14653357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 14662991 - 14663148
Alignment:
Q  1 acttcattataccaaatattgtagttcctttatttcctgattaaaattctgcaacacacagacaaaaaattctgctccagtccgagagtgtgaagt---- 96  Q
    ||||||||||||||||| ||||  |||| |||| ||||||||||||||||||||||  |||  ||||| ||||| |||||||||||||||||||||        
T  14662991 acttcattataccaaattttgtttttccattatatcctgattaaaattctgcaacatgcaggaaaaaatttctgttccagtccgagagtgtgaagtgaag 14663090  T
Q  97 -atgctgttgaat-gaaatttcgaagaccagctctacgccaacaaagctcactgttat 152  Q
     |||||| |||||  ||||| | |||||||||||||||||||||||||||||||||||    
T  14663091 catgctgctgaataaaaattccaaagaccagctctacgccaacaaagctcactgttat 14663148  T

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Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 160 - 243
Target Start/End: Complemental strand, 14707162 - 14707079
Alignment:
Q  160 accattttcgcataaggcacaattcggaaggtaaactagttgtcaatgtaacaaaaatacaatgaagtttagacgtaaatcaac 243  Q
    |||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||| ||| |||||||||    
T  14707162 accatttttgcataaggcacagttcggaaggtaaactagctgtcaatgtaacaaaaatataatgaagttttgacataaatcaac 14707079  T

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Target: chr1; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 150 - 217
Target Start/End: Original strand, 14653382 - 14653449
Alignment:
Q  150 tatcttcgataccattttcgcataaggcacaattcggaaggtaaactagttgtcaatgtaacaaaaat 217  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||    
T  14653382 tatcttcgataccattttcgaataaggcacagttcggaaggtaaactagctgtcaatgtaacaaaaat 14653449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 150 - 217
Target Start/End: Original strand, 14663173 - 14663240
Alignment:
Q  150 tatcttcgataccattttcgcataaggcacaattcggaaggtaaactagttgtcaatgtaacaaaaat 217  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||    
T  14663173 tatcttcgataccattttcgaataaggcacagttcggaaggtaaactagctgtcaatgtaacaaaaat 14663240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 14707243 - 14707193
Alignment:
Q  1 acttcattataccaaatattgtagttcctttatttcctgattaaaattctg 51  Q
    ||||||||||||||||| |||| |||||||||||| |||||||||| ||||    
T  14707243 acttcattataccaaattttgttgttcctttatttgctgattaaaactctg 14707193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 30732602 - 30732387
Alignment:
Q  1 acttcattataccaaatattgtagttcctttatttcctgattaaaattctgcaacacacagacaaaaaattctgctccagtccgagagtgtgaagtatgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |    
T  30732602 acttcattataccaaatattgtagttcctttatttcctgattaaaattctgcaacacgcagacaaaaaattctgctccagtccgagagtgcgaagtatac 30732503  T
Q  101 tgttgaatgaaatttcgaagaccagctctacgccaacaaagctcactgttatcttcgataccattttcgcataaggcacaattcggaaggtaaactagtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||    
T  30732502 tgttgaatgaaatttcgaagaccagctctacgccaacaaagctcactgttatcttcgataccattttcgcataaggcacaattcggaa----------tt 30732413  T
Q  201 gtcaatgtaacaaaaatacaatgaag 226  Q
    ||||||||||||||||||||||||||    
T  30732412 gtcaatgtaacaaaaatacaatgaag 30732387  T

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