View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18318_high_35 (Length: 230)
Name: NF18318_high_35
Description: NF18318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18318_high_35 |
 | |
|
| [»] scaffold0032 (1 HSPs) |
| | |
|
| [»] scaffold0111 (1 HSPs) |
| | |
|
| [»] scaffold0416 (1 HSPs) |
| | |
|
| [»] scaffold0093 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 10708635 - 10708422
Alignment:
| Q |
1 |
aatgtggctttgaaagttgatattaaaaaagccttcgatacgttgaattggaactttctggttgtggtgctccgaaagtttggtttttcttctctgttta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10708635 |
aatgtggctttgaaagttgatattaaaaaagccttcaatacgttggattggaactttctggttgtggtgctccgaaagtttggtttttcttctctgttta |
10708536 |
T |
|
| Q |
101 |
ccgactggattcttgctattttgcactcagctagactttctattttggtgaatggtaagccagtgggttttttctcttgttctcgtggtgtccgacaagg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
10708535 |
ccgactggattcttgctattttgcactcagctagactttctattttggtgaatggtaaggcagtgggttttttctcttgttctcgtagtgtccgacaagg |
10708436 |
T |
|
| Q |
201 |
tgaccctttatctc |
214 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
10708435 |
tgaccctttatctc |
10708422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 10922405 - 10922192
Alignment:
| Q |
1 |
aatgtggctttgaaagttgatattaaaaaagccttcgatacgttgaattggaactttctggttgtggtgctccgaaagtttggtttttcttctctgttta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10922405 |
aatgtggctttgaaagttgatattaaaaaagccttcaatacgttggattggaactttctggttgtggtgctccgaaagtttggtttttcttctctgttta |
10922306 |
T |
|
| Q |
101 |
ccgactggattcttgctattttgcactcagctagactttctattttggtgaatggtaagccagtgggttttttctcttgttctcgtggtgtccgacaagg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
10922305 |
ccgactggattcttgctattttgcactcagctagactttctattttggtgaatggtaaggcagtgggttttttctcttgttctcgtagtgtccgacaagg |
10922206 |
T |
|
| Q |
201 |
tgaccctttatctc |
214 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
10922205 |
tgaccctttatctc |
10922192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 119; Significance: 6e-61; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 40 - 214
Target Start/End: Complemental strand, 41248046 - 41247873
Alignment:
| Q |
40 |
acgttgaattggaactttctggttgtggtgctccgaaagtttggtttttcttctctgtttaccgactggattcttgctattttgcactcagctagacttt |
139 |
Q |
| |
|
|||||| ||||||||||| ||| | |||||| || |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| || |||| |
|
|
| T |
41248046 |
acgttggattggaacttt-tggccgcggtgcttcggaagtttggtttttcttctatgtttaccgactgaattcttgctattttgcactcagccaggcttt |
41247948 |
T |
|
| Q |
140 |
ctattttggtgaatggtaagccagtgggttttttctcttgttctcgtggtgtccgacaaggtgaccctttatctc |
214 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
41247947 |
ctattttggtgaatggtaagacagtgggttttttctcttgttctcgtggtgtctgacaaggtgaccctttatctc |
41247873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 214
Target Start/End: Original strand, 44377826 - 44377922
Alignment:
| Q |
118 |
attttgcactcagctagactttctattttggtgaatggtaagccagtgggttttttctcttgttctcgtggtgtccgacaaggtgaccctttatctc |
214 |
Q |
| |
|
||||| ||||| || ||||| ||||||||||||||||| || | |||||||| ||||||||| |||||||| || ||||| ||||||||||||| |
|
|
| T |
44377826 |
attttacactcggcaagactctctattttggtgaatggcaaagcggtgggtttcttctcttgtgtccgtggtgttcgtcaaggagaccctttatctc |
44377922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 214
Target Start/End: Original strand, 44393406 - 44393502
Alignment:
| Q |
118 |
attttgcactcagctagactttctattttggtgaatggtaagccagtgggttttttctcttgttctcgtggtgtccgacaaggtgaccctttatctc |
214 |
Q |
| |
|
||||| ||||| || ||||| ||||||||||||||||| || | |||||||| ||||||||| |||||||| || ||||| ||||||||||||| |
|
|
| T |
44393406 |
attttacactcggcaagactctctattttggtgaatggcaaagcggtgggtttcttctcttgtgtccgtggtgttcgtcaaggagaccctttatctc |
44393502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0032 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0032
Description:
Target: scaffold0032; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 125589 - 125782
Alignment:
| Q |
1 |
aatgtggctttgaaagttgatattaaaaaagccttcgatacgttgaattggaactttctggttgtggtgctccgaaagtttggtttttcttctctgttta |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||| | || || ||||| ||||||| ||| |||||| | |||| ||| || |||||||||| |||||| |
|
|
| T |
125589 |
aatgtggctttgaaggttgatattaaaaaggtatttgacacgttagattggaattttttggttgcgatgctaaaaaaattcggtttttctttggtgttta |
125688 |
T |
|
| Q |
101 |
ccgactggattcttgctattttgcactcagctagactttctattttggtgaatggtaagccagtgggttttttctcttgttctcgtggtgtccg |
194 |
Q |
| |
|
| ||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||| | ||||| ||||| |||||||| |||| ||||| |
|
|
| T |
125689 |
cgaactggatccttgctattttgcactcagctaggctttctattttggtgaatcgtaaggcggtgggattttttacttgttcttgtggcgtccg |
125782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0111 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0111
Description:
Target: scaffold0111; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 43855 - 43642
Alignment:
| Q |
1 |
aatgtggctttgaaagttgatattaaaaaagccttcgatacgttgaattggaactttctggttgtggtgctccgaaagtttggtttttcttctctgttta |
100 |
Q |
| |
|
|||||||| ||| |||| ||||||||||| ||||| | ||||||| |||| || || || | | ||||||| |||| |||||||| || | |||||| |
|
|
| T |
43855 |
aatgtggcattgtaagtcgatattaaaaaggcctttgttacgttggattgaaatttcttgatagcggtgctcagaaaatttggtttctcacatttgttta |
43756 |
T |
|
| Q |
101 |
ccgactggattcttgctattttgcactcagctagactttctattttggtgaatggtaagccagtgggttttttctcttgttctcgtggtgtccgacaagg |
200 |
Q |
| |
|
| ||||||||||||||||| || | |||||| | || ||||| ||||||||||||||| ||||||| || ||| |||||||||||| |||||||| || |
|
|
| T |
43755 |
ctgactggattcttgctatcttatattcagctcggctctctatcttggtgaatggtaaggcagtgggattcttcaattgttctcgtggagtccgacaggg |
43656 |
T |
|
| Q |
201 |
tgaccctttatctc |
214 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
43655 |
ggaccctctatctc |
43642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 21490421 - 21490208
Alignment:
| Q |
1 |
aatgtggctttgaaagttgatattaaaaaagccttcgatacgttgaattggaactttctggttgtggtgctccgaaagtttggtttttcttctctgttta |
100 |
Q |
| |
|
|||||||| || ||||| ||||||||||| ||||| ||||| ||| ||||||| || || | | ||||||| |||| |||||||| || | |||||| |
|
|
| T |
21490421 |
aatgtggcattaaaagtcgatattaaaaaggcctttgatacattggattggaatttcttgatagcggtgctcagaaaatttggtttctcacatttgttta |
21490322 |
T |
|
| Q |
101 |
ccgactggattcttgctattttgcactcagctagactttctattttggtgaatggtaagccagtgggttttttctcttgttctcgtggtgtccgacaagg |
200 |
Q |
| |
|
| |||||||| |||||||| || || |||||| | || || || ||||||||||||||| ||||||| || ||| ||||||||| || |||||| | || |
|
|
| T |
21490321 |
ctgactggatacttgctatcttacattcagctcggctctccatcttggtgaatggtaaggcagtgggattcttcaattgttctcggggagtccgataggg |
21490222 |
T |
|
| Q |
201 |
tgaccctttatctc |
214 |
Q |
| |
|
||||||||||||| |
|
|
| T |
21490221 |
ggaccctttatctc |
21490208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0416 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0416
Description:
Target: scaffold0416; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 77 - 214
Target Start/End: Original strand, 12392 - 12529
Alignment:
| Q |
77 |
agtttggtttttcttctctgtttaccgactggattcttgctattttgcactcagctagactttctattttggtgaatggtaagccagtgggttttttctc |
176 |
Q |
| |
|
||||||||||||||||| | || || | |||||| | || ||||| ||||| || ||||||||||||||||||||||| ||| | |||| || ||||| |
|
|
| T |
12392 |
agtttggtttttcttctgttttctccaattggattttggcaattttacactcggccagactttctattttggtgaatggcaaggcgctggggttcttctc |
12491 |
T |
|
| Q |
177 |
ttgttctcgtggtgtccgacaaggtgaccctttatctc |
214 |
Q |
| |
|
|||| |||||||| || ||||| ||||||||||||| |
|
|
| T |
12492 |
ttgtgtccgtggtgttcgtcaaggggaccctttatctc |
12529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0093
Description:
Target: scaffold0093; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 139 - 214
Target Start/End: Original strand, 13658 - 13733
Alignment:
| Q |
139 |
tctattttggtgaatggtaagccagtgggttttttctcttgttctcgtggtgtccgacaaggtgaccctttatctc |
214 |
Q |
| |
|
|||||||| |||||||| ||| ||||||||||||||||||| ||||||||||| | ||||| |||||| |||||| |
|
|
| T |
13658 |
tctattttagtgaatggaaaggcagtgggttttttctcttgctctcgtggtgtgcatcaaggagaccctctatctc |
13733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 206
Target Start/End: Original strand, 12161157 - 12161224
Alignment:
| Q |
139 |
tctattttggtgaatggtaagccagtgggttttttctcttgttctcgtggtgtccgacaaggtgaccc |
206 |
Q |
| |
|
|||||||||||||||| || | ||||||||||||||||||||| ||||||| |||||||| ||||| |
|
|
| T |
12161157 |
tctattttggtgaatgcaaaagcggtgggttttttctcttgttcttgtggtgttcgacaaggagaccc |
12161224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 206
Target Start/End: Original strand, 15157168 - 15157235
Alignment:
| Q |
139 |
tctattttggtgaatggtaagccagtgggttttttctcttgttctcgtggtgtccgacaaggtgaccc |
206 |
Q |
| |
|
|||||||||||||||| || | ||||||||||||||||||||| ||||||| |||||||| ||||| |
|
|
| T |
15157168 |
tctattttggtgaatgcaaaagcggtgggttttttctcttgttcttgtggtgttcgacaaggagaccc |
15157235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 136 - 206
Target Start/End: Original strand, 19178111 - 19178181
Alignment:
| Q |
136 |
ctttctattttggtgaatggtaagccagtgggttttttctcttgttctcgtggtgtccgacaaggtgaccc |
206 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||| || ||||| || || |||||||| ||||| ||||| |
|
|
| T |
19178111 |
ctttctattttggtgaatggtaaggcggtgggtttcttttcttgctcccgcggtgtccgtcaaggagaccc |
19178181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University