View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18318_high_9 (Length: 525)
Name: NF18318_high_9
Description: NF18318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18318_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 19 - 515
Target Start/End: Complemental strand, 21510008 - 21509512
Alignment:
| Q |
19 |
aatgtggcacacaagtctaagttgcgactaactttggtcggtctagcaactcaatccgcataggctatagatgttagaaattggacgactcaatgataaa |
118 |
Q |
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| T |
21510008 |
aatgtggcacacaagtctaagttgcgactaactttggtcagtctggcaactcaatccacataggctatagatgttagaaattggacgactcaatgataaa |
21509909 |
T |
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| Q |
119 |
gaaagataattgcaataagatggatgctcaaaggacatagtttgcgtaattaaaataccaaagatcaaaattgcacaattatgttatctacggactaaaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
21509908 |
gaaagataattgcaataagatggatgctcaaaggacatagttcgcgcaattaaaataccaaagatcaaaattgcacaattatattatctacggactaaaa |
21509809 |
T |
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| Q |
219 |
tttcaaagcgaactaattttcattttgattaagtaaaagaatcatacatacacgaataaattgggaaattcgtcattcataccttaggtgatggatgacg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21509808 |
tttcaaagcgaactaattttcattttgattaagtaaaagaatcatacatacacgaataaattgggaaattcgtcattcataccttaggtgatggatgacg |
21509709 |
T |
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| Q |
319 |
cgggtctcgcatgggcgagggaggcttcaccgctccatttttcctagtaattctttcatgaaatttaacatcttcctgaaaactattttctttctgttca |
418 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21509708 |
cgggtctcgcatgggcgagggaggcttcactgctccatttttcctagtaattctttcatgaaatttaacatcttcctgaaaactattttctttctgttca |
21509609 |
T |
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| Q |
419 |
acagaatttttagaaaatcctgttttttcattaagactgaagtcattgagattataatcacccttgatagctttacttatgaaatgcaatgcctttg |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
21509608 |
acagaatttttagaaaatcctgttttttcattaagactgaagtcattgagattataatcacccttgattgctttacttatgaaatgcaatgcctttg |
21509512 |
T |
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