View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18318_low_10 (Length: 524)
Name: NF18318_low_10
Description: NF18318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18318_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 16 - 451
Target Start/End: Original strand, 25587591 - 25588030
Alignment:
| Q |
16 |
caattttgattatcattgataaatttcaaactaaacatggcatctgcaggatttggactagctgaaacatatgtgatgcagaagatgtataatgaaaaaa |
115 |
Q |
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| T |
25587591 |
caattttgattatcattgataaatttgaaactagaaatggcatctgcaggatttggactagctgaaacatacgtgatgcaaaagatgtacaatgaaaaaa |
25587690 |
T |
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| Q |
116 |
tgaagaaaatagcacatgaagagaaacaagatgtttctcctgctatggttagaaaggattcttctattcacaaaacatcaattggttgtttctcattttt |
215 |
Q |
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| T |
25587691 |
tgaagaaaatagcacatgaagagaaacaagatgtttctcctggtatggttagaaagga---ttctattcacaaaacatcaattggttgtttctccttttt |
25587787 |
T |
|
| Q |
216 |
tcccaagtatcagcataggaagatttctaggatatcagattccaacgactcatgagttcaaattgtgttacataattaattcttca---nnnnnnnnnnn |
312 |
Q |
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|||||| ||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
25587788 |
tcccaaacatcagcataggaatatttctcggatatcagattccaacgactcatgacttcaaattgtgttacataattaattcttcatttctttttttttt |
25587887 |
T |
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| Q |
313 |
nnnnnaatctccaatagatgctgattaattcatcttgttggttagaaaattatattatttacaagtgaacatgtaatgaattgttctataaagtatcaaa |
412 |
Q |
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| T |
25587888 |
tttttaatctccaatagatgctgattaattcatcttgttggttagaaaattatattatttgcaagtgaacatgtaatgaactgttctataaagtatcaaa |
25587987 |
T |
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| Q |
413 |
ttgtaattttgcttattcgatg----aatattatcattttgga |
451 |
Q |
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| T |
25587988 |
ttgtaagtttgtttatccaatgaattaatattatcattttgga |
25588030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 229 - 472
Target Start/End: Original strand, 25565407 - 25565647
Alignment:
| Q |
229 |
cataggaagatttctaggatatcagattccaacgactcatgagttcaaattgtgttacataattaattcttcannnnnnnnnnnnnnnnaatctccaata |
328 |
Q |
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| T |
25565407 |
catagaaagatttctcggatatcagattccaacgactcatgacttcaa-ttgtgttacataattaattcttcattctttttattttt--aatctccaata |
25565503 |
T |
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| Q |
329 |
gatgctgattaattcatcttgttggttagaaaattatattatttacaagtgaacatgtaatgaattgttctataaagtatcaaattgtaattttgcttat |
428 |
Q |
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| T |
25565504 |
gatgctgattaattcatcttgttggttagaaaaatatattatttgcaagtgaacatgtaatgaactgttctataaagtatcaaattgtaattttgcttat |
25565603 |
T |
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| Q |
429 |
tcgatgaatattatcattttggaatctattgccaaatttaaatt |
472 |
Q |
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| T |
25565604 |
tcaatgaatattatcattttggaatttattgccaaatttaaatt |
25565647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 475 - 513
Target Start/End: Original strand, 25565674 - 25565712
Alignment:
| Q |
475 |
tatgtggaatcttcatgcatgttaatatcgtctctgctc |
513 |
Q |
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| T |
25565674 |
tatgtggaatcttcatgcatgttaatatcgtccctgctc |
25565712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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