View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18318_low_12 (Length: 506)
Name: NF18318_low_12
Description: NF18318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18318_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 17 - 335
Target Start/End: Original strand, 22814288 - 22814607
Alignment:
| Q |
17 |
tattcactctatttttaaaatacattttcaataactttcatactgcatttacttactctcggcaccgccaaggcgatccacacactcgacaaacttctca |
116 |
Q |
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| T |
22814288 |
tattcactctatttttaaaatacattttcaataactttcataatgcatttacttactctcggcaccgccaaggcgattcacacactcaacaaacttctca |
22814387 |
T |
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| Q |
117 |
tgaagatcttgagtccatcttattcgtgttttactagaaacggatgatccat-acaagcagggtttccggaattagttgagacatttcctgttgacatag |
215 |
Q |
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| T |
22814388 |
tgaagatcttgagtccatcttattcgtgttttactagaaaccgatgatccattacaagcagggtttccggaattagttgagacatttcctgttgacatag |
22814487 |
T |
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| Q |
216 |
ttggagacagtttatcttgttgataagagaaatccagctgtgaacccggaaaatcatatgaaccacaagaaacctacaaaacacgaaagattcgacaaac |
315 |
Q |
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| T |
22814488 |
ttggagacagtttatcttgctgataagagaaattcagctgtgaacccggaaaatcatatgaaccacaagaaacctacaaaacacgaaagattcgacaaac |
22814587 |
T |
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| Q |
316 |
ttttaaccaactaatgaatg |
335 |
Q |
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| T |
22814588 |
ttttaaccaactaatgaatg |
22814607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 379 - 491
Target Start/End: Original strand, 22814651 - 22814763
Alignment:
| Q |
379 |
caatacttactttatgatcctgatttccattagaatgaattaatggactcatactaactgatacagcatcatcaatgaagaatttatgttgctcaactga |
478 |
Q |
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| T |
22814651 |
caatacttactttatgatcctgatttccattagaatgaattaatggactcatactaactgatgcagcatcatcaatgaagaatttatgttgctcaactga |
22814750 |
T |
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| Q |
479 |
gagataattttct |
491 |
Q |
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| T |
22814751 |
gagataattttct |
22814763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 62 - 164
Target Start/End: Original strand, 22811242 - 22811344
Alignment:
| Q |
62 |
catttacttactctcggcaccgccaaggcgatccacacactcgacaaacttctcatgaagatcttgagtccatcttattcgtgttttactagaaacggat |
161 |
Q |
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||||||||||||||||||||| |||||||||| |||| |||| |||||||| ||||||||||| |||||||| |||||| ||| ||||| ||||| ||| |
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| T |
22811242 |
catttacttactctcggcaccaccaaggcgattcacagactcaacaaacttgtcatgaagatcaggagtccatgttattcttgtattacttgaaaccgat |
22811341 |
T |
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| Q |
162 |
gat |
164 |
Q |
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||| |
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| T |
22811342 |
gat |
22811344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 66 - 157
Target Start/End: Original strand, 36941568 - 36941659
Alignment:
| Q |
66 |
tacttactctcggcaccgccaaggcgatccacacactcgacaaacttctcatgaagatcttgagtccatcttattcgtgttttactagaaac |
157 |
Q |
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||||||||||| ||||| ||||| |||| |||||||| |||||||||||||||||||| | ||||||||| |||| ||||||||| ||||| |
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| T |
36941568 |
tacttactctcagcacccccaagtcgatttacacactcaacaaacttctcatgaagatccttagtccatctaattcttgttttacttgaaac |
36941659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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