View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18318_low_13 (Length: 494)
Name: NF18318_low_13
Description: NF18318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18318_low_13 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 1 - 494
Target Start/End: Complemental strand, 12874924 - 12874432
Alignment:
| Q |
1 |
ttctaatttgcttcataacatggtcgggaatgactggtcatatgacttttgtcatatttcgaggtctttgctgatcacctaaaaatcaatttcttcaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12874924 |
ttctaatttgcttcataacatggtcgggaatgactggtcatatgacttttgtcatatttcgaggtctttgctgatcacctaaaaatcaatttcttcaaca |
12874825 |
T |
|
| Q |
101 |
ctttagcctaatcatatttaatcataaaataaatctgattttatcacttaactatcctcttattatcatcattaattgtgaactaagattgcaattagtc |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
12874824 |
ctttagcctaatcatttttaatcataaaataaatctgattttatcacttaactatcctcttattatcatcattaattgtgatctaagat-gcaattagtc |
12874726 |
T |
|
| Q |
201 |
gctaacactatgtttgtttgggtagatttaggaaagggagaaatgacaaagaaaaggataggagagaaataaagaagttctatagctaggaagagcatga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
12874725 |
gctaacactatgtttgtttgggtagatttaggaaagggagaaatgacaaagaaaaggataggagagaaataaagaatttctatagctaggaagagcatga |
12874626 |
T |
|
| Q |
301 |
aaataagggtgtagagaaattggaccctaatttactaaagtagtaatttcacgcggcaacacgcattaatcaatgtcaactattgatttaagattccacg |
400 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
12874625 |
aaataagggtggagagaaattggaccctaatttactaaagtagtaatttcacgcggtaacacgcattaatcaatatcaactattgatttaagattccacg |
12874526 |
T |
|
| Q |
401 |
atttagattatacatgcactaatataatctcgaccatatcatcgggtagtttaggttgcagttgtgtcgcacaatatagaagacaatcgaattc |
494 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12874525 |
atttagattatacatgcactaatataatctcgaccatatcatcgggtagtttaggttgcagttgtgtcgcacaatatagaagacaatcgaattc |
12874432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University