View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18318_low_15 (Length: 460)
Name: NF18318_low_15
Description: NF18318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18318_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 13 - 301
Target Start/End: Original strand, 40510765 - 40511060
Alignment:
| Q |
13 |
atatcagttgta-agcccaatttatcattcaaaaaacaaagtttcgtctcatctcaatcccacttcacaagcaagattaaattaatactcccaccacatt |
111 |
Q |
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| T |
40510765 |
atatcagttgtagagcccaatttatcattcaaaaaacaaagtttcgtctcatctcaatcccacttcacaagcaagattaaattaatactcccaccacatt |
40510864 |
T |
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| Q |
112 |
aacattaaca------attacaacaatttattactttagtatatactgttgcacattccccttttgttacnnnnnnncaaagtacatcacattcatgcaa |
205 |
Q |
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| T |
40510865 |
aacattaacattaacaattacaacaatttattactttagtatatactgttgcacattccccttttgttacaaaaaaacaaagtacatcacattcatgcaa |
40510964 |
T |
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| Q |
206 |
gttaattataacaatgtatataaatcattaaatacgtgtatatcactcttaagccaagtatttttgttctttgtaggccctgaagctgaccctccc |
301 |
Q |
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| T |
40510965 |
gttaattataacaatgtatataaatcattaaatacgtgtatatcactcttaagccaagtatttttgttctttgtaggccctgaagctgaccctccc |
40511060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 364 - 446
Target Start/End: Original strand, 40511118 - 40511200
Alignment:
| Q |
364 |
gacattatattacttactataaggtaagaagaggaatagaaaaggaattaagctgagttcattcacgagaacaatgaagtgaa |
446 |
Q |
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| T |
40511118 |
gacattatattacttactataaggtaagaagaggaatagaaaaggaattaagctgagttcattcacgagaacaatgaagtgaa |
40511200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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