View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18318_low_17 (Length: 438)
Name: NF18318_low_17
Description: NF18318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18318_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 10 - 420
Target Start/End: Original strand, 34561106 - 34561515
Alignment:
| Q |
10 |
aagaaaatcatggatcccacaatgatgttggaaaaatatttggtaaatgatggcattttgggtgaatgccatggcggagatgtacgacggtgaagatgta |
109 |
Q |
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| T |
34561106 |
aagaaaatcatggatcccacaatgatgttggaaaaatatttggtaaatgatggcattttgggtgaatgccatggcagagatgtacgacggtgaagatgta |
34561205 |
T |
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| Q |
110 |
tctataaacattctgactatcaaatcagtttaatagttgaatcccttaaaaggtctacaataagagatatattcataggtgacaatgtgagacaaatatg |
209 |
Q |
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| T |
34561206 |
tctataaacattatgacgatcaaatcagtttaatagttgaatctcttaaaaggtctacaataagagagatatttataggtgacaatgtgagacaattatg |
34561305 |
T |
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| Q |
210 |
gccttaaagaagggtattgggattttccatcccaaaagtctactccgaaatagtttttcctaggcgtttaaaattaaggacaaaattttgatggcaactt |
309 |
Q |
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| T |
34561306 |
gccttaaagaagggtattgggattttccatcccaaaagtctactccgaaatagtttttcccaggcgtttaaaattaaggacaaaattttgatggcaactt |
34561405 |
T |
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| Q |
310 |
acacaattcaaaatggtcactaccttagaaaagtggttggacaaacttgaagttggaatattgacatcatatataaaaatcatcaatggtctaagccaca |
409 |
Q |
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| T |
34561406 |
gcacaattcaaaacggtcactaccttagaaaagtggttggacaaacttgaagttgg-atattgacatcatatataaaaatcatcaatggtctaagccaca |
34561504 |
T |
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| Q |
410 |
tatgacggttg |
420 |
Q |
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| T |
34561505 |
tatgacggttg |
34561515 |
T |
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