View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18318_low_2 (Length: 960)
Name: NF18318_low_2
Description: NF18318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18318_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 529; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 1 - 624
Target Start/End: Complemental strand, 30337582 - 30336959
Alignment:
| Q |
1 |
tgtcctgacaatttgaagtttattaatcattccaaactcggcaaatgagaacgacgcctgaatgggagaaaggttatctatgaaaacgagttgttggaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30337582 |
tgtcctgacaatttgaagtttattaatcattccaaactcggcaaatgagaacgacccctgaatgggagaaaggttatctatgaaaacgagttgttggaga |
30337483 |
T |
|
| Q |
101 |
gtcgtagggaaagtggaaagagagataatgatagggttttctcggttgttgaagcattcacggaagatgagttttccaaggtagttgaaaggggtgaaaa |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30337482 |
gttgtagggaaagtggaaagagagataatgataggattttcacggttgttgaagcattcacggaagatgagttttccaaggtagttgaaaggggtgaaaa |
30337383 |
T |
|
| Q |
201 |
gagttgagttaaaggtagcattatgggagcaaggaagggtgggattttgtttttcatcggcatcatagttgccgaaattcatctcaacaacgtgtgatct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30337382 |
gagttgagttaaaggtagcattatgggagcaaggtagggtgggattttgtttttcatcggaatcatagttgccgaagttcatctcaacaacgtgtgatct |
30337283 |
T |
|
| Q |
301 |
tagtttgcgatactgaagaagatgaaagtaggagtaacggcaaacaatgccgggtggtgggaagcgacagaggtcgccggagaagcgagttgtccatggg |
400 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30337282 |
tagtttgcgatacttaagaagatgaaagtaggagtaacggcaaacaacgccgggtgggggtaagcgacagaggtcgccggagaagcgagttgtccatggg |
30337183 |
T |
|
| Q |
401 |
aaatctgggttgatggagttgagaacattgtagagtgctttttgttcggttgggtgaatgggtggtttgtaattccagagaaagatggatgataagcaaa |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30337182 |
aaatctgggttgatggagttgagaacattgtagagtgctttttgttcagttgggtgtatgggtggtttgtaattccagagaaagatggatgataagcaaa |
30337083 |
T |
|
| Q |
501 |
tgtatgagaaagcaagtattatcagtgcttgtgttattgttgaagccattgattc----agtgttttggattttgggaaatggaaaagatgaatggaatg |
596 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30337082 |
tgtatgagaaagcaagtattatcagtgcttgtg---ttgttgaacccattgattcagtgagtgttttggattttgggaaatggaaaagatgaatggaatg |
30336986 |
T |
|
| Q |
597 |
tgggtgatttgtgttgttatatactact |
624 |
Q |
| |
|
||||||| |||| ||||||||||||||| |
|
|
| T |
30336985 |
tgggtga-ttgtattgttatatactact |
30336959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 304 - 575
Target Start/End: Complemental strand, 30325642 - 30325370
Alignment:
| Q |
304 |
tttgcgatactgaagaagatgaaagtaggagtaacggcaaacaatgccgggtggtgggaagcgacagaggtcgccggagaagcgagttgtccatgggaaa |
403 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
30325642 |
tttgcgatactgaagaaaatgaaagtaggagtaacggcaaacaatgccgggtggtgggaagcgacagaggtcgccggggaagcgagtggtccatgggaaa |
30325543 |
T |
|
| Q |
404 |
tctgggttgatggagttgagaacattgtagagtgctttttgttcggttgggtgaatgggtggtttgtaattccagagaaagatggatgataagcaaatgt |
503 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||| |||| |||||| |
|
|
| T |
30325542 |
tctgggttgatggagttgagaacattgtagagtgctttttgttcggttgggtgtatgggtggtttgtaattccagagaaggatgaatgttaagaaaatgt |
30325443 |
T |
|
| Q |
504 |
atgagaaagcaagtattatcagtgcttgtgttattgttgaagccattgattc----agtgttttggattttgggaa |
575 |
Q |
| |
|
|||||||||| || ||||| |||||||||| |||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
30325442 |
atgagaaagccagcattattagtgcttgtg---ttgttgaacccattgattcagtgagtgttttggattttgggaa |
30325370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 130; E-Value: 7e-67
Query Start/End: Original strand, 624 - 862
Target Start/End: Complemental strand, 30336813 - 30336594
Alignment:
| Q |
624 |
tattgaagggaggacaggtggaggtgcatggagaaagaacaaaaccacaaac-----aatgtattttattccactatgtggctgcatatgcattttatta |
718 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
30336813 |
tattgaagggaggacaggtggaggtgcatggagaaagaacaaaaccacaaacaatataatgtattttattccactatgtggctgc--atgcattttat-- |
30336718 |
T |
|
| Q |
719 |
gttaataaggtccaatttatttacattaagccaggagaatgttaatgtaataatgttttaattcaaattaagtacacagtagatggataacaatttggtt |
818 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30336717 |
--------------------ttacattaagccaggagaatgttaatgtaataatggtttaattcaaattaagtacacagtagatggataacaatttggtt |
30336638 |
T |
|
| Q |
819 |
tatttagcaacaaatgaagatgaataagaattggagtgttgtta |
862 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
30336637 |
tatttagcaacaaatgaagatggataagaattggagtcttgtta |
30336594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 894 - 943
Target Start/End: Complemental strand, 30336577 - 30336528
Alignment:
| Q |
894 |
aaattggttgaggttgcaattgggaaaatctgtttcctaccacgccttgc |
943 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
30336577 |
aaattggttgaggttgccattgggaaaatctgtttcctaccacgccttgc |
30336528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 106 - 198
Target Start/End: Complemental strand, 30325840 - 30325748
Alignment:
| Q |
106 |
agggaaagtggaaagagagataatgatagggttttctcggttgttgaagcattcacggaagatgagttttccaaggtagttgaaaggggtgaa |
198 |
Q |
| |
|
|||||||| ||||||||||| | || ||||||||| ||||||||||||||||||||||| ||||| || |||||||||||||||||||| |
|
|
| T |
30325840 |
agggaaaggggaaagagagaggttaatggggttttctgggttgttgaagcattcacggaaggtgagtaatcggaggtagttgaaaggggtgaa |
30325748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 406 - 455
Target Start/End: Original strand, 30343383 - 30343432
Alignment:
| Q |
406 |
tgggttgatggagttgagaacattgtagagtgctttttgttcggttgggt |
455 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
30343383 |
tgggttgagggagttgagaacattgtagagtgctttttgttctgttgggt |
30343432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 557 - 620
Target Start/End: Complemental strand, 30327961 - 30327900
Alignment:
| Q |
557 |
gtgttttggattttgggaaatggaaaagatgaatggaatgtgggtgatttgtgttgttatatac |
620 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||| |||||||||| ||| ||||||||||||| |
|
|
| T |
30327961 |
gtgttttggattctgggat-tggaaaagatgaatgaaatgtgggtggttt-tgttgttatatac |
30327900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University