View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18318_low_20 (Length: 378)

Name: NF18318_low_20
Description: NF18318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18318_low_20
NF18318_low_20
[»] chr6 (8 HSPs)
chr6 (157-360)||(14861291-14861494)
chr6 (24-133)||(14861182-14861291)
chr6 (241-285)||(14865640-14865684)
chr6 (151-188)||(9024176-9024213)
chr6 (325-360)||(14865685-14865720)
chr6 (248-360)||(25358731-25358835)
chr6 (150-182)||(9750448-9750480)
chr6 (140-188)||(12235509-12235556)
[»] chr8 (1 HSPs)
chr8 (35-357)||(35144489-35144812)
[»] chr2 (6 HSPs)
chr2 (146-188)||(18570994-18571036)
chr2 (152-188)||(37402085-37402121)
chr2 (158-188)||(4229415-4229445)
chr2 (146-184)||(31808103-31808141)
chr2 (146-184)||(34993977-34994015)
chr2 (152-184)||(18889592-18889624)
[»] chr1 (5 HSPs)
chr1 (143-188)||(30847712-30847757)
chr1 (151-184)||(7918211-7918244)
chr1 (151-184)||(20157350-20157383)
chr1 (151-184)||(21038109-21038142)
chr1 (151-184)||(25361912-25361945)
[»] chr3 (4 HSPs)
chr3 (152-188)||(20691341-20691377)
chr3 (151-188)||(4704292-4704329)
chr3 (158-190)||(3730172-3730204)
chr3 (151-183)||(29386511-29386543)
[»] chr4 (2 HSPs)
chr4 (153-188)||(18513243-18513278)
chr4 (151-183)||(6933302-6933334)
[»] chr7 (3 HSPs)
chr7 (146-184)||(4909177-4909215)
chr7 (151-184)||(18013074-18013107)
chr7 (145-182)||(18226972-18227009)
[»] scaffold0049 (1 HSPs)
scaffold0049 (151-188)||(56944-56981)


Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 157 - 360
Target Start/End: Original strand, 14861291 - 14861494
Alignment:
Q  157 tgacacatatgattacactgaattatgtcattattggtgtctgcatttcgttgtttgtgtcatgtctgatgtctgtgtttatgtttcatagaataaaagt 256  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  14861291 tgacacatatgattacactgaattatgtcattatcggtgtctgcatttcgttgtttgtgtcatgtctggtgtctgtgtttatgtttcatagaataaaagt 14861390  T
Q  257 gccatacaagactataatatctcatccatttttcaacattctcatgtctcaacattttgtatctcgaactaaactcaatgaaatccaaatctaaagttgt 356  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  14861391 gccatacaagactataatatctcatccatttttcaacattctcatgtctcaacattttgtatctccaactaaactcaatgaaatccaaatctaaagttgt 14861490  T
Q  357 tcct 360  Q
    ||||    
T  14861491 tcct 14861494  T

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Target: chr6; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 24 - 133
Target Start/End: Original strand, 14861182 - 14861291
Alignment:
Q  24 tttttggtcgtttttcttgagtgatttagagtcctaaatcacccaccgattcacacacccacaccgaaaattaagacctacgaagcaagggcactcctcg 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  14861182 tttttggtcgtttttcttgagtgatttagagtcctaaatcacccaccgattcacacacccacaccgaaaattaagacctacgaagcaaggacactcctcg 14861281  T
Q  124 aattatgtgt 133  Q
    ||||||||||    
T  14861282 aattatgtgt 14861291  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 241 - 285
Target Start/End: Original strand, 14865640 - 14865684
Alignment:
Q  241 ttcatagaataaaagtgccatacaagactataatatctcatccat 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  14865640 ttcatagaataaaagtgccatacaagactataatatctcatccat 14865684  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 151 - 188
Target Start/End: Original strand, 9024176 - 9024213
Alignment:
Q  151 cgacactgacacatatgattacactgaattatgtcatt 188  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  9024176 cgacactgacacatatgattacattgaattatgtcatt 9024213  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 325 - 360
Target Start/End: Original strand, 14865685 - 14865720
Alignment:
Q  325 ctaaactcaatgaaatccaaatctaaagttgttcct 360  Q
    |||||||||||||||||||||| |||||||||||||    
T  14865685 ctaaactcaatgaaatccaaatgtaaagttgttcct 14865720  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 248 - 360
Target Start/End: Original strand, 25358731 - 25358835
Alignment:
Q  248 aataaaagtgccatacaagactataatatctcatccatttttcaacattctcatgtctcaacattttgtatctcgaactaaactcaatgaaatccaaatc 347  Q
    |||||||||| | ||||||||||||||||||||| ||| |||||||        || ||||||||||||| ||     || ||||||| |||||||||||    
T  25358731 aataaaagtgtcgtacaagactataatatctcattcatctttcaac--------gtttcaacattttgtaacttctgttacactcaattaaatccaaatc 25358822  T
Q  348 taaagttgttcct 360  Q
    |||||||||||||    
T  25358823 taaagttgttcct 25358835  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 182
Target Start/End: Original strand, 9750448 - 9750480
Alignment:
Q  150 tcgacactgacacatatgattacactgaattat 182  Q
    ||||||||||||||||| |||||||||||||||    
T  9750448 tcgacactgacacatataattacactgaattat 9750480  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 188
Target Start/End: Original strand, 12235509 - 12235556
Alignment:
Q  140 acgtcggtgttcgacactgacacatatgattacactgaattatgtcatt 188  Q
    ||||||||||  ||||| ||||| |||||||||||||||||||||||||    
T  12235509 acgtcggtgtcggacac-gacacctatgattacactgaattatgtcatt 12235556  T

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Target: chr8 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 35 - 357
Target Start/End: Complemental strand, 35144812 - 35144489
Alignment:
Q  35 ttttcttgagtg-atttagagtcctaaatcacccaccgattcacacacccacaccgaaaattaagacctacgaagcaagggcactcctcgaattatgtgt 133  Q
    |||||||||||| ||||||||||||||||||| |||| ||||||||||||| |||||||||||||||| |||||||| |  ||||||||| |||| ||||    
T  35144812 ttttcttgagtgcatttagagtcctaaatcactcaccaattcacacacccataccgaaaattaagacccacgaagcatgaacactcctcggattaggtgt 35144713  T
Q  134 atcctgacgtcggtgttcgacactgaca---catatgattacactgaattatgtcattattggtgtctgcatttcgttgtttgtgtcatgtctgatgtct 230  Q
     ||||||||||||||| | ||||  |||   |||||||||| |||||||||||||||| | |||||| || ||||| |||||||||| |||| | | |||    
T  35144712 gtcctgacgtcggtgtccaacaccaacaacgcatatgattagactgaattatgtcattgtcggtgtcagcgtttcgatgtttgtgtcgtgtccggtctct 35144613  T
Q  231 gtgtttatgtttcatagaataaaagtgccatacaagactataatatctcatccatttttcaacattctcatgtctcaacattttgtatctcgaactaaac 330  Q
     ||||| || |||||||||||||||| ||||| |||||||||| ||||| ||||| |||||||||||   ||||||||||| ||||| ||| ||||| ||    
T  35144612 atgtttgtgcttcatagaataaaagtaccatataagactataacatctcgtccatctttcaacattc---tgtctcaacatcttgtaactccaactagac 35144516  T
Q  331 tcaatgaaatccaaatctaaagttgtt 357  Q
    |||||||||||||||||||||||||||    
T  35144515 tcaatgaaatccaaatctaaagttgtt 35144489  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 146 - 188
Target Start/End: Complemental strand, 18571036 - 18570994
Alignment:
Q  146 gtgttcgacactgacacatatgattacactgaattatgtcatt 188  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  18571036 gtgttcgacactgacacatatgattacattgaattatgtcatt 18570994  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 37402085 - 37402121
Alignment:
Q  152 gacactgacacatatgattacactgaattatgtcatt 188  Q
    |||||||||||||||||||||| ||||||||||||||    
T  37402085 gacactgacacatatgattacattgaattatgtcatt 37402121  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 188
Target Start/End: Original strand, 4229415 - 4229445
Alignment:
Q  158 gacacatatgattacactgaattatgtcatt 188  Q
    |||||||||||||||||||||||||||||||    
T  4229415 gacacatatgattacactgaattatgtcatt 4229445  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 184
Target Start/End: Complemental strand, 31808141 - 31808103
Alignment:
Q  146 gtgttcgacactgacacatatgattacactgaattatgt 184  Q
    |||||| |||||||||||||| |||||||||||||||||    
T  31808141 gtgttcaacactgacacatataattacactgaattatgt 31808103  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 184
Target Start/End: Original strand, 34993977 - 34994015
Alignment:
Q  146 gtgttcgacactgacacatatgattacactgaattatgt 184  Q
    ||||||||||||||||||||| |||||| ||||||||||    
T  34993977 gtgttcgacactgacacatataattacattgaattatgt 34994015  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 184
Target Start/End: Original strand, 18889592 - 18889624
Alignment:
Q  152 gacactgacacatatgattacactgaattatgt 184  Q
    ||||| |||||||||||||||||||||||||||    
T  18889592 gacaccgacacatatgattacactgaattatgt 18889624  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 30847712 - 30847757
Alignment:
Q  143 tcggtgttcgacactgacacatatgattacactgaattatgtcatt 188  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||    
T  30847712 tcggtgttcaacactgacacatatgattacattgaattatgtcatt 30847757  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 184
Target Start/End: Original strand, 7918211 - 7918244
Alignment:
Q  151 cgacactgacacatatgattacactgaattatgt 184  Q
    |||||||||||||||| |||||||||||||||||    
T  7918211 cgacactgacacatataattacactgaattatgt 7918244  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 184
Target Start/End: Original strand, 20157350 - 20157383
Alignment:
Q  151 cgacactgacacatatgattacactgaattatgt 184  Q
    |||||| |||||||||||||||||||||||||||    
T  20157350 cgacaccgacacatatgattacactgaattatgt 20157383  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 184
Target Start/End: Complemental strand, 21038142 - 21038109
Alignment:
Q  151 cgacactgacacatatgattacactgaattatgt 184  Q
    |||||||||| |||||||||||||||||||||||    
T  21038142 cgacactgacgcatatgattacactgaattatgt 21038109  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 184
Target Start/End: Complemental strand, 25361945 - 25361912
Alignment:
Q  151 cgacactgacacatatgattacactgaattatgt 184  Q
    |||||||||||||||| |||||||||||||||||    
T  25361945 cgacactgacacatataattacactgaattatgt 25361912  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 20691377 - 20691341
Alignment:
Q  152 gacactgacacatatgattacactgaattatgtcatt 188  Q
    ||||| |||||||||||||||||||||||||||||||    
T  20691377 gacaccgacacatatgattacactgaattatgtcatt 20691341  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 188
Target Start/End: Original strand, 4704292 - 4704329
Alignment:
Q  151 cgacactgacacatatgattacactgaattatgtcatt 188  Q
    ||||| || |||||||||||||||||||||||||||||    
T  4704292 cgacaatggcacatatgattacactgaattatgtcatt 4704329  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 190
Target Start/End: Original strand, 3730172 - 3730204
Alignment:
Q  158 gacacatatgattacactgaattatgtcattat 190  Q
    ||||| |||||||||||||||||||||||||||    
T  3730172 gacacctatgattacactgaattatgtcattat 3730204  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 183
Target Start/End: Original strand, 29386511 - 29386543
Alignment:
Q  151 cgacactgacacatatgattacactgaattatg 183  Q
    |||||| ||||||||||||||||||||||||||    
T  29386511 cgacaccgacacatatgattacactgaattatg 29386543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 153 - 188
Target Start/End: Original strand, 18513243 - 18513278
Alignment:
Q  153 acactgacacatatgattacactgaattatgtcatt 188  Q
    ||||||||||||||||||||| ||||||||||||||    
T  18513243 acactgacacatatgattacattgaattatgtcatt 18513278  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 183
Target Start/End: Complemental strand, 6933334 - 6933302
Alignment:
Q  151 cgacactgacacatatgattacactgaattatg 183  Q
    ||||||||||||||||||||| |||||||||||    
T  6933334 cgacactgacacatatgattaaactgaattatg 6933302  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 184
Target Start/End: Complemental strand, 4909215 - 4909177
Alignment:
Q  146 gtgttcgacactgacacatatgattacactgaattatgt 184  Q
    |||| ||||||||||||||||||||||| ||||||||||    
T  4909215 gtgtccgacactgacacatatgattacaatgaattatgt 4909177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 184
Target Start/End: Original strand, 18013074 - 18013107
Alignment:
Q  151 cgacactgacacatatgattacactgaattatgt 184  Q
    |||||||||||||||| |||||||||||||||||    
T  18013074 cgacactgacacatataattacactgaattatgt 18013107  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 182
Target Start/End: Complemental strand, 18227009 - 18226972
Alignment:
Q  145 ggtgttcgacactgacacatatgattacactgaattat 182  Q
    |||||||||||| |||||||||||||| ||||||||||    
T  18227009 ggtgttcgacaccgacacatatgattatactgaattat 18226972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 188
Target Start/End: Complemental strand, 56981 - 56944
Alignment:
Q  151 cgacactgacacatatgattacactgaattatgtcatt 188  Q
    |||||||||||| ||||||||||||||||||| |||||    
T  56981 cgacactgacacttatgattacactgaattatatcatt 56944  T

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