View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18318_low_21 (Length: 366)
Name: NF18318_low_21
Description: NF18318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18318_low_21 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 4 - 352
Target Start/End: Original strand, 31654208 - 31654556
Alignment:
| Q |
4 |
agatgaaaacaagtgtatagatgaacaattggtatcctatttgggacgaagagttcgaattccaattgactgttccagagcttgcattgctccggatcga |
103 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31654208 |
agatgaaaacaagtgtaaagatggacaattggtatcctgtttgggacgaagagttcgaattccaattgactgttccagagcttgcattgctccggatcga |
31654307 |
T |
|
| Q |
104 |
agtgaaagataaagataagggatcagacgattttgctggacaaacttgtttgcctgtatcagagctaagacatggatttcggtctgttgctttgtgtgac |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31654308 |
agtgaaagataaagataagggatcagacgattttgctggacaaacttgtttgcctgtatcagagctaagacatggatttcggtctgttgctttgtgtgac |
31654407 |
T |
|
| Q |
204 |
agaaagggnnnnnnntataactctgtcaagcttttacttggattccaccttgaaactttaaatatattgtagacgtcgttcatccaaatatgggaatcgg |
303 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31654408 |
agaaagggaaagaaatataactctgtcaagcttttacttggattccaccttgaaactttaaatatattgtagacgtcgttcatccaaatatgggaatcgg |
31654507 |
T |
|
| Q |
304 |
attcacgcattaaatacgtgagacattcatttattttggtagtcttatg |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31654508 |
attcacgcattaaatacgtgagacattcatttattttggtagtcttatg |
31654556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 8 - 262
Target Start/End: Original strand, 31704580 - 31704834
Alignment:
| Q |
8 |
gaaaacaagtgtatagatgaacaattggtatcctatttgggacgaagagttcgaattccaattgactgttccagagcttgcattgctccggatcgaagtg |
107 |
Q |
| |
|
||||||||||||| ||||| |||||||| |||| ||||||||||||||||| || |||| ||||| ||||| ||||| || ||||||||||||||||| |
|
|
| T |
31704580 |
gaaaacaagtgtaaagatggacaattggaatcccatttgggacgaagagtttgagttccgtttgacagttccggagctcgcgttgctccggatcgaagta |
31704679 |
T |
|
| Q |
108 |
aaagataaagataagggatcagacgattttgctggacaaacttgtttgcctgtatcagagctaagacatggatttcggtctgttgctttgtgtgacagaa |
207 |
Q |
| |
|
|| ||||||||| || | ||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31704680 |
aaggataaagatcagacaaaagatgattttgctggacagacttgtttgccagtatcagagctaagacatggatttcggtctgttgctttgtgtgacagaa |
31704779 |
T |
|
| Q |
208 |
agggnnnnnnntataactctgtcaagcttttacttggattccaccttgaaacttt |
262 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
31704780 |
agggaaagaaatataactctgtcaagcttttacttggattccaactagaaacttt |
31704834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 8 - 130
Target Start/End: Original strand, 31717792 - 31717914
Alignment:
| Q |
8 |
gaaaacaagtgtatagatgaacaattggtatcctatttgggacgaagagttcgaattccaattgactgttccagagcttgcattgctccggatcgaagtg |
107 |
Q |
| |
|
||||||||| ||| ||| | |||| |||||||||||||||||||||| |||| ||| || |||| || ||| ||||| || ||||||||||||| |||| |
|
|
| T |
31717792 |
gaaaacaagagtagagacggacaactggtatcctatttgggacgaagtgttcaaatcccgtttgagtgatccggagctcgctttgctccggatcgcagtg |
31717891 |
T |
|
| Q |
108 |
aaagataaagataagggatcaga |
130 |
Q |
| |
|
|| ||||||||||||| |||||| |
|
|
| T |
31717892 |
aaggataaagataaggcatcaga |
31717914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 40 - 276
Target Start/End: Complemental strand, 44901423 - 44901187
Alignment:
| Q |
40 |
ctatttgggacgaagagttcgaattccaattgactgttccagagcttgcattgctccggatcgaagtgaaagataaagataagggatcagacgattttgc |
139 |
Q |
| |
|
||||||||||||||||||| | ||||| ||| || ||||||||||||| ||||||| ||||||| |||| |||||||||| | |||| |||||| | |
|
|
| T |
44901423 |
ctatttgggacgaagagtttgtattccgattaaccattccagagcttgctttgctccagatcgaactgaaggataaagatatgacgacagatgatttttc |
44901324 |
T |
|
| Q |
140 |
tggacaaacttgtttgcctgtatcagagctaagacatggatttcggtctgttgctttgtgtgacagaaagggnnnnnnntataactctgtcaagctttta |
239 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||| | ||||||||| ||||||||| |
|
|
| T |
44901323 |
cggacagacctgtttgcctgtatcagagctaagacatggatttcggtttgttcgtttgtgtgactgaaaggggaagaaatttaactctgttaagctttta |
44901224 |
T |
|
| Q |
240 |
cttggattccaccttgaaactttaaatatattgtaga |
276 |
Q |
| |
|
||| | || ||| |||||||| |||||||||||||| |
|
|
| T |
44901223 |
cttcgctttcacgttgaaactacaaatatattgtaga |
44901187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 30102313 - 30102354
Alignment:
| Q |
132 |
gattttgctggacaaacttgtttgcctgtatcagagctaaga |
173 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||| ||||| |
|
|
| T |
30102313 |
gattttgctggacaaacatgtttacctgtatcagagttaaga |
30102354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University