View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18318_low_23 (Length: 313)

Name: NF18318_low_23
Description: NF18318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18318_low_23
NF18318_low_23
[»] chr2 (9 HSPs)
chr2 (74-231)||(41258758-41258916)
chr2 (263-313)||(39812184-39812234)
chr2 (260-313)||(44312820-44312873)
chr2 (263-313)||(19344259-19344309)
chr2 (263-313)||(19349117-19349167)
chr2 (263-313)||(32246623-32246673)
chr2 (266-303)||(11099143-11099180)
chr2 (20-67)||(41259027-41259077)
chr2 (266-302)||(14291331-14291367)
[»] chr8 (10 HSPs)
chr8 (263-313)||(39785020-39785070)
chr8 (260-313)||(6311133-6311186)
chr8 (270-313)||(7290123-7290166)
chr8 (266-303)||(30655484-30655521)
chr8 (266-303)||(33038023-33038060)
chr8 (266-303)||(36979221-36979258)
chr8 (270-313)||(25328474-25328517)
chr8 (266-304)||(4760291-4760329)
chr8 (266-304)||(10689358-10689396)
chr8 (266-304)||(18853384-18853422)
[»] scaffold0135 (1 HSPs)
scaffold0135 (260-313)||(35258-35311)
[»] chr7 (10 HSPs)
chr7 (260-313)||(12396747-12396800)
chr7 (260-313)||(12406167-12406220)
chr7 (260-313)||(24024524-24024577)
chr7 (263-313)||(19992151-19992201)
chr7 (263-313)||(21812435-21812485)
chr7 (260-313)||(4866565-4866618)
chr7 (260-313)||(31109779-31109832)
chr7 (266-304)||(2057802-2057840)
chr7 (266-304)||(20357763-20357801)
chr7 (266-306)||(1533654-1533694)
[»] chr6 (7 HSPs)
chr6 (260-313)||(11856807-11856860)
chr6 (260-313)||(22010893-22010946)
chr6 (260-313)||(6438336-6438389)
chr6 (260-313)||(14737773-14737826)
chr6 (260-313)||(14742632-14742685)
chr6 (263-310)||(28184341-28184388)
chr6 (260-313)||(28155767-28155820)
[»] chr5 (12 HSPs)
chr5 (260-313)||(1457358-1457411)
chr5 (260-313)||(43592114-43592167)
chr5 (263-313)||(28807771-28807821)
chr5 (260-313)||(27444805-27444858)
chr5 (260-313)||(30631243-30631296)
chr5 (260-309)||(43598559-43598608)
chr5 (260-309)||(43604051-43604100)
chr5 (260-309)||(43609543-43609592)
chr5 (263-313)||(37556820-37556870)
chr5 (263-313)||(37561642-37561692)
chr5 (260-313)||(27449649-27449702)
chr5 (273-313)||(15044535-15044575)
[»] chr4 (11 HSPs)
chr4 (260-313)||(9224603-9224656)
chr4 (260-313)||(9229390-9229443)
chr4 (260-313)||(51520292-51520345)
chr4 (263-313)||(3813862-3813912)
chr4 (263-313)||(18855565-18855615)
chr4 (260-313)||(45348014-45348067)
chr4 (260-313)||(45357493-45357546)
chr4 (260-309)||(56146912-56146961)
chr4 (270-313)||(5732507-5732550)
chr4 (266-303)||(24741784-24741821)
chr4 (266-301)||(29760486-29760521)
[»] chr3 (6 HSPs)
chr3 (260-313)||(22173391-22173444)
chr3 (270-313)||(18656277-18656320)
chr3 (266-304)||(2671802-2671840)
chr3 (266-304)||(7167088-7167126)
chr3 (265-313)||(32480183-32480231)
chr3 (266-302)||(40373013-40373049)
[»] scaffold0464 (1 HSPs)
scaffold0464 (263-313)||(201-251)
[»] scaffold0127 (1 HSPs)
scaffold0127 (263-313)||(34145-34195)
[»] chr1 (8 HSPs)
chr1 (263-313)||(25445286-25445336)
chr1 (263-313)||(41386587-41386637)
chr1 (263-313)||(39445338-39445388)
chr1 (263-313)||(44024069-44024119)
chr1 (263-312)||(1055209-1055258)
chr1 (266-304)||(24787583-24787621)
chr1 (271-313)||(41398084-41398126)
chr1 (230-258)||(25445356-25445384)
[»] scaffold0479 (1 HSPs)
scaffold0479 (263-309)||(13187-13233)
[»] scaffold0355 (1 HSPs)
scaffold0355 (263-313)||(9836-9886)
[»] scaffold0978 (1 HSPs)
scaffold0978 (266-313)||(444-491)


Alignment Details
Target: chr2 (Bit Score: 147; Significance: 2e-77; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 74 - 231
Target Start/End: Complemental strand, 41258916 - 41258758
Alignment:
Q  74 gaccaccatccaggttctcttgcttcttttccagaggtccggctttctccactccattggtgatcaatctctaatcttc-aaaatgtactagttggtgtc 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  41258916 gaccaccatccaggttctcttgcttcttttccagaggtccggctttctccactccattggtgatcaatctctaatcttctaaaatgtactagttggtgtc 41258817  T
Q  173 ccttcatatatgtagcattttcttttggttgtgtttttatattgttctactaaaatcag 231  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  41258816 ccttcatatatgtagcattttcttttggttgtgtttttatgttgttctactaaaatcag 41258758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 39812234 - 39812184
Alignment:
Q  263 aaccaaagatgtgtggagcaagggatagtggtaatcaatgagaacaaatgg 313  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  39812234 aaccaaagatgtgtggagcaagtgatagtgataatcaatgagaacaaatgg 39812184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 260 - 313
Target Start/End: Complemental strand, 44312873 - 44312820
Alignment:
Q  260 aataaccaaagatgtgtggagcaagggatagtggtaatcaatgagaacaaatgg 313  Q
    ||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  44312873 aataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatgg 44312820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 19344259 - 19344309
Alignment:
Q  263 aaccaaagatgtgtggagcaagggatagtggtaatcaatgagaacaaatgg 313  Q
    |||||||||||||||||||||| ||||||||||||| |||||| |||||||    
T  19344259 aaccaaagatgtgtggagcaagagatagtggtaatctatgagagcaaatgg 19344309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 19349117 - 19349167
Alignment:
Q  263 aaccaaagatgtgtggagcaagggatagtggtaatcaatgagaacaaatgg 313  Q
    |||||||||||||||||||||| ||||||||||||| |||||| |||||||    
T  19349117 aaccaaagatgtgtggagcaagagatagtggtaatctatgagagcaaatgg 19349167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 32246623 - 32246673
Alignment:
Q  263 aaccaaagatgtgtggagcaagggatagtggtaatcaatgagaacaaatgg 313  Q
    |||||| ||||||||||||||| ||||||||||||| ||||||||||||||    
T  32246623 aaccaatgatgtgtggagcaagtgatagtggtaatctatgagaacaaatgg 32246673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 266 - 303
Target Start/End: Complemental strand, 11099180 - 11099143
Alignment:
Q  266 caaagatgtgtggagcaagggatagtggtaatcaatga 303  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  11099180 caaagatgtgtggagcaagagatagtggtaatcaatga 11099143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 41259077 - 41259027
Alignment:
Q  20 agccattagcacatcaa---gagaatccatgttacatcttcattggtatca 67  Q
    |||||||||||||||||   |||||||||||||||||||||| ||||||||    
T  41259077 agccattagcacatcaatcagagaatccatgttacatcttcaatggtatca 41259027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 266 - 302
Target Start/End: Original strand, 14291331 - 14291367
Alignment:
Q  266 caaagatgtgtggagcaagggatagtggtaatcaatg 302  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  14291331 caaaggtgtgtggagcaagagatagtggtaatcaatg 14291367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 39785070 - 39785020
Alignment:
Q  263 aaccaaagatgtgtggagcaagggatagtggtaatcaatgagaacaaatgg 313  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  39785070 aaccaaagatgtgtggagcaagtgatagtgataatcaatgagaacaaatgg 39785020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 260 - 313
Target Start/End: Original strand, 6311133 - 6311186
Alignment:
Q  260 aataaccaaagatgtgtggagcaagggatagtggtaatcaatgagaacaaatgg 313  Q
    ||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  6311133 aataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatgg 6311186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 270 - 313
Target Start/End: Complemental strand, 7290166 - 7290123
Alignment:
Q  270 gatgtgtggagcaagggatagtggtaatcaatgagaacaaatgg 313  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  7290166 gatgtgtggagcaagagatagtggtaatcaatgagaacaaatgg 7290123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 266 - 303
Target Start/End: Original strand, 30655484 - 30655521
Alignment:
Q  266 caaagatgtgtggagcaagggatagtggtaatcaatga 303  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  30655484 caaagatgtgtggagcaagagatagtggtaatcaatga 30655521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 266 - 303
Target Start/End: Complemental strand, 33038060 - 33038023
Alignment:
Q  266 caaagatgtgtggagcaagggatagtggtaatcaatga 303  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  33038060 caaagatgtgtggagcaagagatagtggtaatcaatga 33038023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 266 - 303
Target Start/End: Original strand, 36979221 - 36979258
Alignment:
Q  266 caaagatgtgtggagcaagggatagtggtaatcaatga 303  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  36979221 caaagatgtgtggagcaagagatagtggtaatcaatga 36979258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 270 - 313
Target Start/End: Complemental strand, 25328517 - 25328474
Alignment:
Q  270 gatgtgtggagcaagggatagtggtaatcaatgagaacaaatgg 313  Q
    |||||| |||||||| ||||||| ||||||||||||||||||||    
T  25328517 gatgtgcggagcaagtgatagtgataatcaatgagaacaaatgg 25328474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 304
Target Start/End: Complemental strand, 4760329 - 4760291
Alignment:
Q  266 caaagatgtgtggagcaagggatagtggtaatcaatgag 304  Q
    |||||||||||||||| || |||||||||||||||||||    
T  4760329 caaagatgtgtggagctagagatagtggtaatcaatgag 4760291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 304
Target Start/End: Complemental strand, 10689396 - 10689358
Alignment:
Q  266 caaagatgtgtggagcaagggatagtggtaatcaatgag 304  Q
    ||||||||||||||||||| ||||||||||||| |||||    
T  10689396 caaagatgtgtggagcaagagatagtggtaatctatgag 10689358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 304
Target Start/End: Complemental strand, 18853422 - 18853384
Alignment:
Q  266 caaagatgtgtggagcaagggatagtggtaatcaatgag 304  Q
    ||||||||||||||||||| ||||||||||||| |||||    
T  18853422 caaagatgtgtggagcaagagatagtggtaatctatgag 18853384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 260 - 313
Target Start/End: Complemental strand, 35311 - 35258
Alignment:
Q  260 aataaccaaagatgtgtggagcaagggatagtggtaatcaatgagaacaaatgg 313  Q
    ||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  35311 aataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatgg 35258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 260 - 313
Target Start/End: Original strand, 12396747 - 12396800
Alignment:
Q  260 aataaccaaagatgtgtggagcaagggatagtggtaatcaatgagaacaaatgg 313  Q
    ||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  12396747 aataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatgg 12396800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 260 - 313
Target Start/End: Original strand, 12406167 - 12406220
Alignment:
Q  260 aataaccaaagatgtgtggagcaagggatagtggtaatcaatgagaacaaatgg 313  Q
    ||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  12406167 aataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatgg 12406220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 260 - 313
Target Start/End: Complemental strand, 24024577 - 24024524
Alignment:
Q  260 aataaccaaagatgtgtggagcaagggatagtggtaatcaatgagaacaaatgg 313  Q
    ||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  24024577 aataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatgg 24024524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 19992151 - 19992201
Alignment:
Q  263 aaccaaagatgtgtggagcaagggatagtggtaatcaatgagaacaaatgg 313  Q
    |||||||||||||||||||| | ||||||| ||||||||||||||||||||    
T  19992151 aaccaaagatgtgtggagcaggtgatagtgataatcaatgagaacaaatgg 19992201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 21812485 - 21812435
Alignment:
Q  263 aaccaaagatgtgtggagcaagggatagtggtaatcaatgagaacaaatgg 313  Q
    |||||||||||||||||||||| ||||||||||||| |||||| |||||||    
T  21812485 aaccaaagatgtgtggagcaagagatagtggtaatctatgagagcaaatgg 21812435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 313
Target Start/End: Original strand, 4866565 - 4866618
Alignment:
Q  260 aataaccaaagatgtgtggagcaagggatagtggtaatcaatgagaacaaatgg 313  Q
    ||||| ||| ||||||||||||||| ||||||||||||||||||| ||||||||    
T  4866565 aataaacaatgatgtgtggagcaagagatagtggtaatcaatgaggacaaatgg 4866618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 260 - 313
Target Start/End: Complemental strand, 31109832 - 31109779
Alignment:
Q  260 aataaccaaagatgtgtggagcaagggatagtggtaatcaatgagaacaaatgg 313  Q
    ||||| ||| |||||||| |||||| ||||||| ||||||||||||||||||||    
T  31109832 aataaacaatgatgtgtgcagcaagtgatagtgataatcaatgagaacaaatgg 31109779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 304
Target Start/End: Original strand, 2057802 - 2057840
Alignment:
Q  266 caaagatgtgtggagcaagggatagtggtaatcaatgag 304  Q
    ||||||||||||||||||| ||||||||||||| |||||    
T  2057802 caaagatgtgtggagcaagagatagtggtaatctatgag 2057840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 304
Target Start/End: Complemental strand, 20357801 - 20357763
Alignment:
Q  266 caaagatgtgtggagcaagggatagtggtaatcaatgag 304  Q
    ||||||||||||||||||| ||||||||||||| |||||    
T  20357801 caaagatgtgtggagcaagagatagtggtaatctatgag 20357763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 266 - 306
Target Start/End: Complemental strand, 1533694 - 1533654
Alignment:
Q  266 caaagatgtgtggagcaagggatagtggtaatcaatgagaa 306  Q
    ||||||||||||||||||   ||||||||||||||||||||    
T  1533694 caaagatgtgtggagcaaaatatagtggtaatcaatgagaa 1533654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 260 - 313
Target Start/End: Original strand, 11856807 - 11856860
Alignment:
Q  260 aataaccaaagatgtgtggagcaagggatagtggtaatcaatgagaacaaatgg 313  Q
    ||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  11856807 aataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatgg 11856860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 260 - 313
Target Start/End: Complemental strand, 22010946 - 22010893
Alignment:
Q  260 aataaccaaagatgtgtggagcaagggatagtggtaatcaatgagaacaaatgg 313  Q
    ||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  22010946 aataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatgg 22010893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 313
Target Start/End: Original strand, 6438336 - 6438389
Alignment:
Q  260 aataaccaaagatgtgtggagcaagggatagtggtaatcaatgagaacaaatgg 313  Q
    ||||| ||| ||||||||||||||| |||||||||||||||||||||| |||||    
T  6438336 aataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaaccaatgg 6438389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 313
Target Start/End: Complemental strand, 14737826 - 14737773
Alignment:
Q  260 aataaccaaagatgtgtggagcaagggatagtggtaatcaatgagaacaaatgg 313  Q
    ||||| ||| ||||||||||||||| ||||||| ||||||||||||||||||||    
T  14737826 aataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatgg 14737773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 313
Target Start/End: Complemental strand, 14742685 - 14742632
Alignment:
Q  260 aataaccaaagatgtgtggagcaagggatagtggtaatcaatgagaacaaatgg 313  Q
    ||||| ||| ||||||||||||||| ||||||| ||||||||||||||||||||    
T  14742685 aataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatgg 14742632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 310
Target Start/End: Original strand, 28184341 - 28184388
Alignment:
Q  263 aaccaaagatgtgtggagcaagggatagtggtaatcaatgagaacaaa 310  Q
    |||||| ||||||||||||||| ||||||| |||||||||||||||||    
T  28184341 aaccaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaa 28184388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 260 - 313
Target Start/End: Complemental strand, 28155820 - 28155767
Alignment:
Q  260 aataaccaaagatgtgtggagcaagggatagtggtaatcaatgagaacaaatgg 313  Q
    ||||| ||| ||||||||||||||| ||||||| |||||||||||| |||||||    
T  28155820 aataaacaatgatgtgtggagcaagtgatagtgataatcaatgagagcaaatgg 28155767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 260 - 313
Target Start/End: Complemental strand, 1457411 - 1457358
Alignment:
Q  260 aataaccaaagatgtgtggagcaagggatagtggtaatcaatgagaacaaatgg 313  Q
    ||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  1457411 aataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatgg 1457358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 260 - 313
Target Start/End: Original strand, 43592114 - 43592167
Alignment:
Q  260 aataaccaaagatgtgtggagcaagggatagtggtaatcaatgagaacaaatgg 313  Q
    ||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  43592114 aataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatgg 43592167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 28807821 - 28807771
Alignment:
Q  263 aaccaaagatgtgtggagcaagggatagtggtaatcaatgagaacaaatgg 313  Q
    |||||| ||||||||||||||| ||||||| ||||||||||||||||||||    
T  28807821 aaccaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatgg 28807771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 313
Target Start/End: Original strand, 27444805 - 27444858
Alignment:
Q  260 aataaccaaagatgtgtggagcaagggatagtggtaatcaatgagaacaaatgg 313  Q
    ||||| ||| ||||||||||||||| ||||||||||||||||||| ||||||||    
T  27444805 aataaacaatgatgtgtggagcaagagatagtggtaatcaatgagtacaaatgg 27444858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 313
Target Start/End: Original strand, 30631243 - 30631296
Alignment:
Q  260 aataaccaaagatgtgtggagcaagggatagtggtaatcaatgagaacaaatgg 313  Q
    ||||| ||| ||||||||||||||| ||||||||||||| ||||||||||||||    
T  30631243 aataaacaatgatgtgtggagcaagagatagtggtaatctatgagaacaaatgg 30631296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 309
Target Start/End: Original strand, 43598559 - 43598608
Alignment:
Q  260 aataaccaaagatgtgtggagcaagggatagtggtaatcaatgagaacaa 309  Q
    ||||| ||| ||||||||||||||| ||||||||||||||||||||||||    
T  43598559 aataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaa 43598608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 309
Target Start/End: Original strand, 43604051 - 43604100
Alignment:
Q  260 aataaccaaagatgtgtggagcaagggatagtggtaatcaatgagaacaa 309  Q
    ||||| ||| ||||||||||||||| ||||||||||||||||||||||||    
T  43604051 aataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaa 43604100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 309
Target Start/End: Original strand, 43609543 - 43609592
Alignment:
Q  260 aataaccaaagatgtgtggagcaagggatagtggtaatcaatgagaacaa 309  Q
    ||||| ||| ||||||||||||||| ||||||||||||||||||||||||    
T  43609543 aataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaa 43609592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 37556870 - 37556820
Alignment:
Q  263 aaccaaagatgtgtggagcaagggatagtggtaatcaatgagaacaaatgg 313  Q
    |||||||||||||||||||||| ||||||| ||||| |||||| |||||||    
T  37556870 aaccaaagatgtgtggagcaagtgatagtgataatctatgagagcaaatgg 37556820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 37561692 - 37561642
Alignment:
Q  263 aaccaaagatgtgtggagcaagggatagtggtaatcaatgagaacaaatgg 313  Q
    |||||||||||||||||||||| ||||||| ||||| |||||| |||||||    
T  37561692 aaccaaagatgtgtggagcaagtgatagtgataatctatgagagcaaatgg 37561642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 260 - 313
Target Start/End: Original strand, 27449649 - 27449702
Alignment:
Q  260 aataaccaaagatgtgtggagcaagggatagtggtaatcaatgagaacaaatgg 313  Q
    ||||| ||| ||| ||||||||||| ||||||||||||||||||| ||||||||    
T  27449649 aataaacaatgatatgtggagcaagagatagtggtaatcaatgagtacaaatgg 27449702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 313
Target Start/End: Original strand, 15044535 - 15044575
Alignment:
Q  273 gtgtggagcaagggatagtggtaatcaatgagaacaaatgg 313  Q
    |||| ||||||| ||||||||||||||||||||||||||||    
T  15044535 gtgtagagcaagtgatagtggtaatcaatgagaacaaatgg 15044575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 260 - 313
Target Start/End: Complemental strand, 9224656 - 9224603
Alignment:
Q  260 aataaccaaagatgtgtggagcaagggatagtggtaatcaatgagaacaaatgg 313  Q
    ||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  9224656 aataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatgg 9224603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 260 - 313
Target Start/End: Complemental strand, 9229443 - 9229390
Alignment:
Q  260 aataaccaaagatgtgtggagcaagggatagtggtaatcaatgagaacaaatgg 313  Q
    ||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  9229443 aataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatgg 9229390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 260 - 313
Target Start/End: Original strand, 51520292 - 51520345
Alignment:
Q  260 aataaccaaagatgtgtggagcaagggatagtggtaatcaatgagaacaaatgg 313  Q
    ||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  51520292 aataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatgg 51520345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 3813862 - 3813912
Alignment:
Q  263 aaccaaagatgtgtggagcaagggatagtggtaatcaatgagaacaaatgg 313  Q
    |||||| ||||||||||||||| |||||||||||||||||||| |||||||    
T  3813862 aaccaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatgg 3813912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 18855565 - 18855615
Alignment:
Q  263 aaccaaagatgtgtggagcaagggatagtggtaatcaatgagaacaaatgg 313  Q
    |||||| ||||||||||||||| ||||||| ||||||||||||||||||||    
T  18855565 aaccaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatgg 18855615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 313
Target Start/End: Complemental strand, 45348067 - 45348014
Alignment:
Q  260 aataaccaaagatgtgtggagcaagggatagtggtaatcaatgagaacaaatgg 313  Q
    ||||| ||| ||||||||||||||| ||||||||||||| ||||||||||||||    
T  45348067 aataaacaatgatgtgtggagcaagtgatagtggtaatctatgagaacaaatgg 45348014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 313
Target Start/End: Complemental strand, 45357546 - 45357493
Alignment:
Q  260 aataaccaaagatgtgtggagcaagggatagtggtaatcaatgagaacaaatgg 313  Q
    ||||| ||| ||||||||||||||| ||||||||||||| ||||||||||||||    
T  45357546 aataaacaatgatgtgtggagcaagtgatagtggtaatctatgagaacaaatgg 45357493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 309
Target Start/End: Complemental strand, 56146961 - 56146912
Alignment:
Q  260 aataaccaaagatgtgtggagcaagggatagtggtaatcaatgagaacaa 309  Q
    ||||| ||| ||||||||||||||| ||||||||||||||||||||||||    
T  56146961 aataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaa 56146912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 270 - 313
Target Start/End: Original strand, 5732507 - 5732550
Alignment:
Q  270 gatgtgtggagcaagggatagtggtaatcaatgagaacaaatgg 313  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||    
T  5732507 gatgtgtggagcaagtgatggtggtaatcaatgagaacaaatgg 5732550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 266 - 303
Target Start/End: Original strand, 24741784 - 24741821
Alignment:
Q  266 caaagatgtgtggagcaagggatagtggtaatcaatga 303  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  24741784 caaagatgtgtggagcaagagatagtggtaatcaatga 24741821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 266 - 301
Target Start/End: Original strand, 29760486 - 29760521
Alignment:
Q  266 caaagatgtgtggagcaagggatagtggtaatcaat 301  Q
    ||||||||||||||||||| ||||||||||||||||    
T  29760486 caaagatgtgtggagcaagagatagtggtaatcaat 29760521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 260 - 313
Target Start/End: Complemental strand, 22173444 - 22173391
Alignment:
Q  260 aataaccaaagatgtgtggagcaagggatagtggtaatcaatgagaacaaatgg 313  Q
    ||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  22173444 aataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatgg 22173391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 270 - 313
Target Start/End: Original strand, 18656277 - 18656320
Alignment:
Q  270 gatgtgtggagcaagggatagtggtaatcaatgagaacaaatgg 313  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||    
T  18656277 gatgtgtggagcaagtgatggtggtaatcaatgagaacaaatgg 18656320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 304
Target Start/End: Complemental strand, 2671840 - 2671802
Alignment:
Q  266 caaagatgtgtggagcaagggatagtggtaatcaatgag 304  Q
    ||||||||||||||||||| ||||||||||||| |||||    
T  2671840 caaagatgtgtggagcaagagatagtggtaatctatgag 2671802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 304
Target Start/End: Original strand, 7167088 - 7167126
Alignment:
Q  266 caaagatgtgtggagcaagggatagtggtaatcaatgag 304  Q
    ||||||||||||||||||| ||||||||||||| |||||    
T  7167088 caaagatgtgtggagcaagagatagtggtaatctatgag 7167126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 265 - 313
Target Start/End: Original strand, 32480183 - 32480231
Alignment:
Q  265 ccaaagatgtgtggagcaagggatagtggtaatcaatgagaacaaatgg 313  Q
    |||||||||||||||||||| ||||| ||||||| |||||  |||||||    
T  32480183 ccaaagatgtgtggagcaagagatagaggtaatctatgagtgcaaatgg 32480231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 266 - 302
Target Start/End: Complemental strand, 40373049 - 40373013
Alignment:
Q  266 caaagatgtgtggagcaagggatagtggtaatcaatg 302  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  40373049 caaaggtgtgtggagcaagagatagtggtaatcaatg 40373013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 201 - 251
Alignment:
Q  263 aaccaaagatgtgtggagcaagggatagtggtaatcaatgagaacaaatgg 313  Q
    |||||||||||||||||||||| ||| ||| ||||||||||||||||||||    
T  201 aaccaaagatgtgtggagcaagtgatggtgataatcaatgagaacaaatgg 251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 34195 - 34145
Alignment:
Q  263 aaccaaagatgtgtggagcaagggatagtggtaatcaatgagaacaaatgg 313  Q
    |||||| ||||||||||||||| ||||||| ||||||||||||||||||||    
T  34195 aaccaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatgg 34145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 25445336 - 25445286
Alignment:
Q  263 aaccaaagatgtgtggagcaagggatagtggtaatcaatgagaacaaatgg 313  Q
    |||||| ||||||||||||||| ||||||| ||||||||||||||||||||    
T  25445336 aaccaatgatgtgtggagcaagcgatagtgataatcaatgagaacaaatgg 25445286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 41386587 - 41386637
Alignment:
Q  263 aaccaaagatgtgtggagcaagggatagtggtaatcaatgagaacaaatgg 313  Q
    |||||| ||||||||||||||| ||||||| ||||||||||||||||||||    
T  41386587 aaccaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatgg 41386637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 39445338 - 39445388
Alignment:
Q  263 aaccaaagatgtgtggagcaagggatagtggtaatcaatgagaacaaatgg 313  Q
    |||||| ||||||||||||||| ||||||| ||||||||| ||||||||||    
T  39445338 aaccaatgatgtgtggagcaagtgatagtgataatcaatgtgaacaaatgg 39445388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 44024119 - 44024069
Alignment:
Q  263 aaccaaagatgtgtggagcaagggatagtggtaatcaatgagaacaaatgg 313  Q
    |||||| ||||||||||||||  ||||||| ||||||||||||||||||||    
T  44024119 aaccaatgatgtgtggagcaactgatagtgataatcaatgagaacaaatgg 44024069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 1055258 - 1055209
Alignment:
Q  263 aaccaaagatgtgtggagcaagggatagtggtaatcaatgagaacaaatg 312  Q
    |||||| ||||||||||||||| ||||||| ||||||||| |||||||||    
T  1055258 aaccaatgatgtgtggagcaagtgatagtgataatcaatgtgaacaaatg 1055209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 304
Target Start/End: Complemental strand, 24787621 - 24787583
Alignment:
Q  266 caaagatgtgtggagcaagggatagtggtaatcaatgag 304  Q
    ||||||||||||||||||| |||||||||||| ||||||    
T  24787621 caaagatgtgtggagcaagagatagtggtaataaatgag 24787583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 313
Target Start/End: Original strand, 41398084 - 41398126
Alignment:
Q  271 atgtgtggagcaagggatagtggtaatcaatgagaacaaatgg 313  Q
    |||||||||||||| ||||||| ||||||||||||||| ||||    
T  41398084 atgtgtggagcaagtgatagtgataatcaatgagaacatatgg 41398126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 258
Target Start/End: Complemental strand, 25445384 - 25445356
Alignment:
Q  230 agtgttgtgaatccggttctacaaacgaa 258  Q
    |||||||||||||||||||||||||||||    
T  25445384 agtgttgtgaatccggttctacaaacgaa 25445356  T

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Target: scaffold0479 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 309
Target Start/End: Original strand, 13187 - 13233
Alignment:
Q  263 aaccaaagatgtgtggagcaagggatagtggtaatcaatgagaacaa 309  Q
    |||||||||| ||||||||||| ||||||| ||||||||||||||||    
T  13187 aaccaaagatatgtggagcaagtgatagtgataatcaatgagaacaa 13233  T

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Target: scaffold0355 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 9886 - 9836
Alignment:
Q  263 aaccaaagatgtgtggagcaagggatagtggtaatcaatgagaacaaatgg 313  Q
    |||||| ||||||||||||||| ||||||| |||||||||||| |||||||    
T  9886 aaccaatgatgtgtggagcaagtgatagtgataatcaatgagagcaaatgg 9836  T

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Target: scaffold0978 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0978
Description:

Target: scaffold0978; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 266 - 313
Target Start/End: Complemental strand, 491 - 444
Alignment:
Q  266 caaagatgtgtggagcaagggatagtggtaatcaatgagaacaaatgg 313  Q
    ||||||||||||||||||| ||||||||||||| ||||| | ||||||    
T  491 caaagatgtgtggagcaagagatagtggtaatctatgagcaaaaatgg 444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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