View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18318_low_27 (Length: 291)

Name: NF18318_low_27
Description: NF18318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18318_low_27
NF18318_low_27
[»] chr8 (2 HSPs)
chr8 (18-281)||(27227989-27228252)
chr8 (18-281)||(27223798-27224061)
[»] chr1 (9 HSPs)
chr1 (18-276)||(11547058-11547316)
chr1 (18-255)||(48618250-48618487)
chr1 (126-239)||(48639761-48639874)
chr1 (35-255)||(48666992-48667212)
chr1 (135-210)||(48661442-48661517)
chr1 (126-210)||(48585217-48585301)
chr1 (18-237)||(48652986-48653205)
chr1 (18-238)||(48628731-48628951)
chr1 (19-237)||(48656434-48656652)
[»] chr3 (1 HSPs)
chr3 (59-210)||(19665647-19665798)


Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 281
Target Start/End: Complemental strand, 27228252 - 27227989
Alignment:
Q  18 atattgatgttcaattgtcttctctagtccttaaatacaatgaaataccagatttccttcattgttttagtaagtatccatttcttgggtcactcttatt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27228252 atattgatgttcaattgtcttctctagtccttaaatacaatgaaataccagatttccttcattgttttagtaagtatccatttcttgggtcactcttatt 27228153  T
Q  118 ggaacagattaagaacttgtctaaagtgttttgtgtattggtggatacctatgaggaattggaacatgatttcataaattatatttcaaaaaattctgtc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  27228152 ggaacagattaagaacttgtctaaagtgttttgtgtattggtggatacctatgaggaattggaacatgatttcataaattatatttcaaaatattctgtc 27228053  T
Q  218 ttaataagacccattggtcctttatttcaaaacccaaaaacaaaaactgcaagtaatatctgtg 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27228052 ttaataagacccattggtcctttatttcaaaacccaaaaacaaaaactgcaagtaatatctgtg 27227989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 18 - 281
Target Start/End: Complemental strand, 27224061 - 27223798
Alignment:
Q  18 atattgatgttcaattgtcttctctagtccttaaatacaatgaaataccagatttccttcattgttttagtaagtatccatttcttgggtcactcttatt 117  Q
    ||||||||||||||||||||||| |||| ||||| |||||||| || || |||||  ||||  |||||||||  | | || |||||||| || || || |    
T  27224061 atattgatgttcaattgtcttctgtagttcttaagtacaatgagatcccggattttgttcaaggttttagtacattttcaattcttgggacaatcataat 27223962  T
Q  118 ggaacagattaagaacttgtctaaagtgttttgtgtattggtggatacctatgaggaattggaacatgatttcataaattatatttcaaaaaattctgtc 217  Q
    |||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||| | ||||||||||||||  | ||| |||| |||||||| |||    
T  27223961 ggaacaaattaagaacttgtctaaagtgttttgtgtattggttgatacgtatgaggaactagaacatgatttcatcgactatgtttctaaaaattcagtc 27223862  T
Q  218 ttaataagacccattggtcctttatttcaaaacccaaaaacaaaaactgcaagtaatatctgtg 281  Q
      ||||||||| ||||||||||| ||| |||||||| |||  |||| |||||||||||||||||    
T  27223861 aaaataagacctattggtcctttgtttaaaaacccacaaattaaaaatgcaagtaatatctgtg 27223798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 276
Target Start/End: Complemental strand, 11547316 - 11547058
Alignment:
Q  18 atattgatgttcaattgtcttctctagtccttaaatacaatgaaataccagatttccttcattgttttagtaagtatccatttcttgggtcactcttatt 117  Q
    ||||||||||||||||  ||| || ||||||||||||||||||||| |||||||| ||||||  |||||||   ||||||||||| ||| ||||| | ||    
T  11547316 atattgatgttcaattaccttttcaagtccttaaatacaatgaaatcccagattttcttcatccttttagtccatatccatttctagggacactcatctt 11547217  T
Q  118 ggaacagattaagaacttgtctaaagtgttttgtgtattggtggatacctatgaggaattggaacatgatttcataaattatatttcaaaaaattctgtc 217  Q
     |||||| ||||||| || ||||||||||||||||| || || || |||||||| ||| | ||||||||||||||  | |||||| ||||||| ||  ||    
T  11547216 agaacagtttaagaatttatctaaagtgttttgtgttttagtagaaacctatgaagaactagaacatgatttcattgactatattacaaaaaaatccatc 11547117  T
Q  218 ttaataagacccattggtcctttatttcaaaacccaaaaacaaaaactgcaagtaatat 276  Q
       |||||||| |||||||| || ||| |||| ||||| |  |||  ||||||||||||    
T  11547116 cacataagacctattggtccattgtttaaaaatccaaatattaaaggtgcaagtaatat 11547058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 255
Target Start/End: Original strand, 48618250 - 48618487
Alignment:
Q  18 atattgatgttcaattgtcttctctagtccttaaatacaatgaaataccagatttccttcattgttttagtaagtatccatttcttgggtcactcttatt 117  Q
    ||||||||||||||||  ||| || ||| ||||||||||||||||| |||||||| ||||||  ||||||| | | ||||||||| ||| ||||| | ||    
T  48618250 atattgatgttcaattaccttttcaagttcttaaatacaatgaaatcccagattttcttcatccttttagtcaatttccatttctagggacactcatctt 48618349  T
Q  118 ggaacagattaagaacttgtctaaagtgttttgtgtattggtggatacctatgaggaattggaacatgatttcataaattatatttcaaaaaattctgtc 217  Q
     |||||| ||||||| ||||||||||| |||||||| || || || |||||||| ||| | || |||||||||||  | ||||||||||||||  |  |     
T  48618350 agaacagtttaagaatttgtctaaagtattttgtgttttagtagaaacctatgaagaactagagcatgatttcattgactatatttcaaaaaaaacaatt 48618449  T
Q  218 ttaataagacccattggtcctttatttcaaaacccaaa 255  Q
    ||  |||||||||||||||| || ||||| || |||||    
T  48618450 ttcgtaagacccattggtccattgtttcacaatccaaa 48618487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 126 - 239
Target Start/End: Complemental strand, 48639874 - 48639761
Alignment:
Q  126 ttaagaacttgtctaaagtgttttgtgtattggtggatacctatgaggaattggaacatgatttcataaattatatttcaaaaaattctgtcttaataag 225  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||| ||| | || |||||||||||| |||||||||||||||| ||  ||   |||||    
T  48639874 ttaaggacttgtctaaagtgttttgtgtattagtggatacctatgaagaactagagcatgatttcatagattatatttcaaaaaaatcaatcaccataag 48639775  T
Q  226 acccattggtcctt 239  Q
    ||| ||||||||||    
T  48639774 acctattggtcctt 48639761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 35 - 255
Target Start/End: Complemental strand, 48667212 - 48666992
Alignment:
Q  35 tcttctctagtccttaaatacaatgaaataccagatttccttcattgttttagtaagtatccatttcttgggtcactcttattggaacagattaagaact 134  Q
    |||||| |||| ||||||||||||||||| ||||||||  | |||  |||| |||  |||||| |||| ||| |||||     || |||||| ||| ||     
T  48667212 tcttctatagttcttaaatacaatgaaatcccagattttatacatcctttttgtagatatccaattctagggacactcaccacggcacagataaaggaca 48667113  T
Q  135 tgtctaaagtgttttgtgtattggtggatacctatgaggaattggaacatgatttcataaattatatttcaaaaaattctgtcttaataagacccattgg 234  Q
    |||||||||||||||||||||| |||||||||| ||| ||||| || |||||||||||  ||||||||||  |||| ||  ||   ||||||||| ||||    
T  48667112 tgtctaaagtgttttgtgtattagtggatacctttgaagaattagagcatgatttcatcgattatatttcggaaaaatcaatcgccataagacccgttgg 48667013  T
Q  235 tcctttatttcaaaacccaaa 255  Q
    |||||| ||| |||| |||||    
T  48667012 tcctttgtttaaaaatccaaa 48666992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 135 - 210
Target Start/End: Complemental strand, 48661517 - 48661442
Alignment:
Q  135 tgtctaaagtgttttgtgtattggtggatacctatgaggaattggaacatgatttcataaattatatttcaaaaaa 210  Q
    |||||||||||||||||||||| |||||||||| ||| ||||| || |||||||||||  ||||||||||||||||    
T  48661517 tgtctaaagtgttttgtgtattagtggatacctttgaagaattagagcatgatttcatcgattatatttcaaaaaa 48661442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 126 - 210
Target Start/End: Complemental strand, 48585301 - 48585217
Alignment:
Q  126 ttaagaacttgtctaaagtgttttgtgtattggtggatacctatgaggaattggaacatgatttcataaattatatttcaaaaaa 210  Q
    ||||| |||| |||||||||||||||||||| |||||||||||||| ||| | || ||||| |||||| |||||||||| |||||    
T  48585301 ttaaggacttatctaaagtgttttgtgtattagtggatacctatgaagaactagagcatgaattcatagattatatttcgaaaaa 48585217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 48653205 - 48652986
Alignment:
Q  18 atattgatgttcaattgtcttctctagtccttaaatacaatgaaataccagatttccttcattgttttagtaagtatccatttcttgggtcactcttatt 117  Q
    ||||||||||||||||  ||| | |||| |||||| | |||||||| |||||||| || |||  ||||||||  | || ||   ||||| ||||| | ||    
T  48653205 atattgatgttcaattaccttttgtagttcttaaacataatgaaatcccagattttctgcatccttttagtacatttctatcatttgggacactcgtctt 48653106  T
Q  118 ggaacagattaagaacttgtctaaagtgttttgtgtattggtggatacctatgaggaattggaacatgatttcataaattatatttcaaaaaattctgtc 217  Q
     ||||| |||||||| || |||||||| |||||||| || || || |||||||| ||| | || |||||||||||  | ||||||||||| || ||  ||    
T  48653105 agaacaaattaagaatttatctaaagtattttgtgttttagtagaaacctatgaagaactagagcatgatttcattgactatatttcaaacaaatcaatc 48653006  T
Q  218 ttaataagacccattggtcc 237  Q
     | |||||||||||||||||    
T  48653005 ctcataagacccattggtcc 48652986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 48628951 - 48628731
Alignment:
Q  18 atattgatgttcaattgtcttctctagtccttaaatacaatgaaataccagatttccttcattgttttagtaagtatccatttcttgggtcactcttatt 117  Q
    ||||||||||||| ||| ||| | |||||||||||||||||||||| ||||||||    |||  ||||| |   |||||| |||| ||| ||||| |       
T  48628951 atattgatgttcatttgccttttatagtccttaaatacaatgaaatcccagatttaacacatccttttaatccctatccaattctagggacactcatcac 48628852  T
Q  118 ggaacagattaagaacttgtctaaagtgttttgtgtattggtggatacctatgaggaattggaacatgatttcataaattatatttcaaaaaattctgtc 217  Q
    |  ||| || || |||||||| ||| | ||||||||||| | |||||||||||| ||| | || |||||||||||  ||||| |||| ||||| || |||    
T  48628851 gtcacatatgaataacttgtccaaaatattttgtgtattagcggatacctatgaagaactagagcatgatttcatcgattatctttccaaaaaatcagtc 48628752  T
Q  218 ttaataagacccattggtcct 238  Q
     | || |||||||||||||||    
T  48628751 ctcattagacccattggtcct 48628731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 237
Target Start/End: Complemental strand, 48656652 - 48656434
Alignment:
Q  19 tattgatgttcaattgtcttctctagtccttaaatacaatgaaataccagatttccttcattgttttagtaagtatccatttcttgggtcactcttattg 118  Q
    |||||||||||||||| ||||| ||||||||||| ||| |||||| || | | | || |||  || || ||  ||||| ||||| ||  ||||| | ||     
T  48656652 tattgatgttcaattgccttctgtagtccttaaacacagtgaaattcctgttcttctgcatccttctaatacatatccctttctaggcccactcatttta 48656553  T
Q  119 gaacagattaagaacttgtctaaagtgttttgtgtattggtggatacctatgaggaattggaacatgatttcataaattatatttcaaaaaattctgtct 218  Q
    | ||| |||||||| ||||||||||  || |||||||| |||||||||||||| ||| | || | |||||| ||  ||||||||||  |||| ||  ||     
T  48656552 ggacaaattaagaatttgtctaaagcattgtgtgtatttgtggatacctatgaagaactagagcctgattttatcgattatatttcggaaaagtcaatca 48656453  T
Q  219 taataagacccattggtcc 237  Q
    | |||||||| ||||||||    
T  48656452 tcataagaccaattggtcc 48656434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 59 - 210
Target Start/End: Original strand, 19665647 - 19665798
Alignment:
Q  59 gaaataccagatttccttcattgttttagtaagtatccatttcttgggtcactcttattggaacagattaagaacttgtctaaagtgttttgtgtattgg 158  Q
    |||||||| ||||| || |||  ||||||||| ||| ||||||| ||| ||||| | || |||||| ||||||| || ||||||||||||||||||||||    
T  19665647 gaaataccggattttctacatccttttagtaaatattcatttctagggacactcattttagaacagtttaagaatttatctaaagtgttttgtgtattgg 19665746  T
Q  159 tggatacctatgaggaattggaacatgatttcataaattatatttcaaaaaa 210  Q
    ||||||  ||||| ||| | || ||||||| |||  | |||||||| |||||    
T  19665747 tggatagttatgatgaactagagcatgattacatcgactatatttcgaaaaa 19665798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University