View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18318_low_28 (Length: 279)
Name: NF18318_low_28
Description: NF18318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18318_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 19 - 269
Target Start/End: Complemental strand, 182531 - 182281
Alignment:
| Q |
19 |
actctacagtttctgggtctaagccatgcataatatctacaaccaaaattgcaatatcacatagacttgaaccccaagaaattgagttattgaatgattg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
182531 |
actctacagtttctgggtctaagccatgcataatatctacaaccaaaattgcaatatcacatagacttgaaccccaagaaattgagttattgaatgattg |
182432 |
T |
|
| Q |
119 |
gtggcctggggtatcaataaccagtagacgcctacttccatggacaggaaagtatgttgtgccactctgttggttgataccgccttcttgaaaattgtta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
182431 |
gtggcctggggtatcaataaccagtagacgcctacttccatggacaggaaagtatgttgtgccactctgttggtcgataccgccttcttgaaaattgtta |
182332 |
T |
|
| Q |
219 |
cctcgaataccacccagaagcttggtttttccagtgttgacatcacctatg |
269 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
182331 |
cctcgaataccacccagaagcttggtttttccagtgttgacatcacctatg |
182281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 40 - 122
Target Start/End: Original strand, 29220230 - 29220313
Alignment:
| Q |
40 |
agccatgcataatatctacaaccaaaattgcaatatca-catagacttgaaccccaagaaattgagttattgaatgattggtgg |
122 |
Q |
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| T |
29220230 |
agccacgcataatgttaacaaccaaaattgcaatatcaacatagacttgaaccccaaaaatgggagttattgaatgattggtgg |
29220313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 90
Target Start/End: Original strand, 593608 - 593657
Alignment:
| Q |
41 |
gccatgcataatatctacaaccaaaattgcaatatcacatagacttgaac |
90 |
Q |
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| T |
593608 |
gccatgcataatgtctacaaccaaaattgcgatatcacatagacctgaac |
593657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 269
Target Start/End: Complemental strand, 3014042 - 3013986
Alignment:
| Q |
213 |
ttgttacctcgaataccacccagaagcttggtttttccagtgttgacatcacctatg |
269 |
Q |
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|||||||||||||||| ||| |||||| ||||||| ||||||| ||||||||||| |
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| T |
3014042 |
ttgttacctcgaatacaaccgagaagcgtggttttgccagtgtacgcatcacctatg |
3013986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 83
Target Start/End: Complemental strand, 3014173 - 3014133
Alignment:
| Q |
43 |
catgcataatatctacaaccaaaattgcaatatcacataga |
83 |
Q |
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| T |
3014173 |
catgcataatgtcaacaaccaaaatagcaatatcacataga |
3014133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 147
Target Start/End: Complemental strand, 44605079 - 44604951
Alignment:
| Q |
19 |
actctacagtttctgggtctaagccatgcataatatctacaaccaaaattgcaatatcacatagacttgaaccccaagaaattgagttattgaatgattg |
118 |
Q |
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|||||| ||||| ||| ||||||||||||||||| || |||||||||||||||||||||||||||| |||||||| ||| || ||||||||||||||| |
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| T |
44605079 |
actctatagtttgtggctctaagccatgcataatgtcaacaaccaaaattgcaatatcacatagacctgaaccccgagaccttaagttattgaatgattc |
44604980 |
T |
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| Q |
119 |
gtggcctggggtatcaataaccagtagac |
147 |
Q |
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| T |
44604979 |
gtggcctggggtatcaataaccagtagac |
44604951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 147
Target Start/End: Complemental strand, 44626844 - 44626716
Alignment:
| Q |
19 |
actctacagtttctgggtctaagccatgcataatatctacaaccaaaattgcaatatcacatagacttgaaccccaagaaattgagttattgaatgattg |
118 |
Q |
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|||||| ||||| ||| ||||||||||||||||| || |||||||||||||||||||||||||||| |||||||| ||| | ||||||||||||| | |
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| T |
44626844 |
actctatagtttgtggctctaagccatgcataatgtccacaaccaaaattgcaatatcacatagacctgaaccccgagacctcaagttattgaatgactc |
44626745 |
T |
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| Q |
119 |
gtggcctggggtatcaataaccagtagac |
147 |
Q |
| |
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||| ||||||||||||||||||||||||| |
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| T |
44626744 |
gtgtcctggggtatcaataaccagtagac |
44626716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 255
Target Start/End: Complemental strand, 44626608 - 44626554
Alignment:
| Q |
201 |
ccttcttgaaaattgttacctcgaataccacccagaagcttggtttttccagtgt |
255 |
Q |
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|||||||||| |||| |||||||||| | | |||||||||||||||| ||||||| |
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| T |
44626608 |
ccttcttgaacattggtacctcgaatgcaatccagaagcttggttttgccagtgt |
44626554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 93
Target Start/End: Original strand, 40672520 - 40672570
Alignment:
| Q |
43 |
catgcataatatctacaaccaaaattgcaatatcacatagacttgaacccc |
93 |
Q |
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|||||||||| || ||||||||||| ||||||||||||||| |||||||| |
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| T |
40672520 |
catgcataatgtcaacaaccaaaatagcaatatcacatagatatgaacccc |
40672570 |
T |
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