View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18318_low_29 (Length: 275)
Name: NF18318_low_29
Description: NF18318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18318_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 17 - 263
Target Start/End: Complemental strand, 33426314 - 33426064
Alignment:
| Q |
17 |
atctatgtcgcactatgttggttgagtctaattaactttcagtatggttatgactaaacaattaattatatgagg--aacttgaagattcaattcatatc |
114 |
Q |
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| T |
33426314 |
atctatgtcgcactatgttggttgagtctaattaactttcactatggttatgactaaataattaatgatatgagagaaacttgaagattcaattcatatt |
33426215 |
T |
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| Q |
115 |
aatttaataagggtttttctcacaagtattcttagaggatccacatacactca-nnnnnnnggtacctaaatacgtcacacttgtacacatcattaa-at |
212 |
Q |
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| T |
33426214 |
aatttaataagggtttttctcacaagtattcttagaggattcacatacactcattttttttggtacctaaatacgtcaaatttgtacacatcactaattt |
33426115 |
T |
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| Q |
213 |
tattattttttaaataataatacctaataaacagtcaatcactccaaccta |
263 |
Q |
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| T |
33426114 |
ttttaaaaaaaaaataataatacctaataaacagtcaatcactccaaccta |
33426064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 260
Target Start/End: Original strand, 32451736 - 32451797
Alignment:
| Q |
198 |
tacacatcattaaattattattttttaaataataatacctaataaacagtcaatcactccaac |
260 |
Q |
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| T |
32451736 |
tacacatcactaatttataattttttaa-tagtaatacctaataagcattcaatcactccaac |
32451797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 260
Target Start/End: Complemental strand, 46487103 - 46487062
Alignment:
| Q |
219 |
tttttaaataataatacctaataaacagtcaatcactccaac |
260 |
Q |
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| T |
46487103 |
ttttttaataataatacctaataaacactcaatccctccaac |
46487062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 196 - 261
Target Start/End: Complemental strand, 35539738 - 35539674
Alignment:
| Q |
196 |
tgtacacatcattaaattattattttttaaataataatacctaataaacagtcaatcactccaacc |
261 |
Q |
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||||||||||||| | |||| ||||||||| || || ||||||||||||| || |||||||||||| |
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| T |
35539738 |
tgtacacatcatttatttataattttttaa-tagtagtacctaataaacactcgatcactccaacc |
35539674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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