View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18318_low_34 (Length: 240)
Name: NF18318_low_34
Description: NF18318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18318_low_34 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 86 - 240
Target Start/End: Complemental strand, 9081126 - 9080972
Alignment:
| Q |
86 |
attattttttctgtcaattaattcattttttcgccaatatataagaagatataagattttggtgttaccnnnnnnngtattttatctttaccaaaactaa |
185 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
9081126 |
attaattttgctgtcaattaattcattttttcgccaatatataagaagatataagattttggtgtgacctttttttgtattttatctttaccaaaactaa |
9081027 |
T |
|
| Q |
186 |
tacatattacaaatgaaaagtaaacaaataatatttaatttttgattaatatttt |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9081026 |
tacatattacaaatgaaaagtaaacaaataatatttaatttttgattaatatttt |
9080972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 9081276 - 9081215
Alignment:
| Q |
4 |
aggcaagtagatgaactcaatttttagtagatttttgcacaaaaagtaattaatattttttt |
65 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9081276 |
aggcaagtagatgaactcaatttttagtagatttttgcacaaaaagtaattaatattttttt |
9081215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University