View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18318_low_5 (Length: 733)
Name: NF18318_low_5
Description: NF18318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18318_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 651; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 651; E-Value: 0
Query Start/End: Original strand, 7 - 715
Target Start/End: Original strand, 37563828 - 37564540
Alignment:
| Q |
7 |
tatataattctcagattcaacaaaatttaaggcccaaactaaaaaatgacaataatttacactgtatttcttatagaaggtgcaactgggcagttggtat |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37563828 |
tatataattctcagattcaacaaaatttaaggcccaaactaaaaaatgacaataatttacactgtatttcttatagaaggtgcaactgggcagttggtat |
37563927 |
T |
|
| Q |
107 |
tgtaactcatattccaaaccttgtccgttctacgacctgacaaaaatggcagtgaaacaactgaactgtgttattcaaactgcattcttttgataccatt |
206 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37563928 |
tgtaactcatattccaaaccaagtccgttctacgacctgacaaaaatggcagtgaaacaaccgaactgtgttattcaaactgcattcttttgataccatt |
37564027 |
T |
|
| Q |
207 |
tgctaattgaatttacagtgaactgtaaatatgcttttatgaattgtaaatacgtattaaaggtaatagaattgacggtgttgaaattaatgtgatggtt |
306 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37564028 |
tgctaattgaatttatagtgaactgtaattatgcttttatgaattgtaaatacgtattaaaggtaatagaattgacggtgttgaaattaatgtgatggtt |
37564127 |
T |
|
| Q |
307 |
ttctg---ttcttctaatgtttgattttggaacatgtaggaactgaaggaattgaaagatcttgaggagcaaatgaaacctaaggtttgattattttcat |
403 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37564128 |
ttctgttcttcttctaatgtttgattttggcacatgtaggaactgaaggaattgaaagatcttgaggagcaaatgaaacctaaggtttgattattttcat |
37564227 |
T |
|
| Q |
404 |
cttttgattgtggttaaac-tttccttccagattctctcaagacacaaaactcctattggtatacatgttatttaaaatataatgaagtggtggattcaa |
502 |
Q |
| |
|
||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37564228 |
cttttaattgtggttaaacttttccttctcgattctctcaagacacaaaactcctattggtatacatgttatttaaaatataatgaagtggtggattcaa |
37564327 |
T |
|
| Q |
503 |
ttgtgcatgcacacgaatcttctataacaaagatgaactagaaattttaaagaggttatcgctctcttactccaaaataagttaaggagcattgcacgtg |
602 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37564328 |
ttgtgcatgcacacgaatcttctataacaaagatgaactagaaattttaaagaggttatcgttctcttactccaaaataagttaaggagcattgcacgtg |
37564427 |
T |
|
| Q |
603 |
tcacttataaaaattaagttaagccggcatattaacatccagtccttgaattttgtagagaacaaaaataatatccgatttgctgatatcagtttcaaag |
702 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37564428 |
tcacttataaaaattaagttaagccggcatattaacatccagtccttgaattttgtagagaacaaaaataatatccgatttgctgatatcagtttcaaag |
37564527 |
T |
|
| Q |
703 |
gctgagagacaag |
715 |
Q |
| |
|
||||||||||||| |
|
|
| T |
37564528 |
gctgagagacaag |
37564540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 643; E-Value: 0
Query Start/End: Original strand, 7 - 715
Target Start/End: Original strand, 37523656 - 37524368
Alignment:
| Q |
7 |
tatataattctcagattcaacaaaatttaaggcccaaactaaaaaatgacaataatttacactgtatttcttatagaaggtgcaactgggcagttggtat |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37523656 |
tatataattctcagattcaacaaaatttaaggcccaaactaaaaaatgacaataatttacactgtatttcttatagaaggtgcaactgggcagttggtat |
37523755 |
T |
|
| Q |
107 |
tgtaactcatattccaaaccttgtccgttctacgacctgacaaaaatggcagtgaaacaactgaactgtgttattcaaactgcattcttttgataccatt |
206 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37523756 |
tgtaactcatattccaaaccaagtccgttctacgacctgacaaaaatggcagtgaaacaaccgaactgtgttattcaaactgcattcttttgataccatt |
37523855 |
T |
|
| Q |
207 |
tgctaattgaatttacagtgaactgtaaatatgcttttatgaattgtaaatacgtattaaaggtaatagaattgacggtgttgaaattaatgtgatggtt |
306 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
37523856 |
tgctaattgaatttatagtgaactgtaattatgcttttatgaattgtaaatacgtattaaaggtaatagaattgacggtgttgcaattaatgtgatggtt |
37523955 |
T |
|
| Q |
307 |
ttctg---ttcttctaatgtttgattttggaacatgtaggaactgaaggaattgaaagatcttgaggagcaaatgaaacctaaggtttgattattttcat |
403 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37523956 |
ttctgttcttcttctaatgtttgattttggcacatgtaggaactgaaggaattgaaagatcttgaggagcaaatgaaacctaaggtttgattattttcat |
37524055 |
T |
|
| Q |
404 |
cttttgattgtggttaaac-tttccttccagattctctcaagacacaaaactcctattggtatacatgttatttaaaatataatgaagtggtggattcaa |
502 |
Q |
| |
|
||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
37524056 |
cttttaattgtggttaaacttttccttctcgattctctcaagacacaaaactcctattggtatacatgttatttaaaatataatgaagtgatggattcaa |
37524155 |
T |
|
| Q |
503 |
ttgtgcatgcacacgaatcttctataacaaagatgaactagaaattttaaagaggttatcgctctcttactccaaaataagttaaggagcattgcacgtg |
602 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37524156 |
ttgtgcatgcacacgaatcttctataacaaagatgaactagaaattttaaagaggttatcgttctcttactccaaaataagttaaggagcattgcacgtg |
37524255 |
T |
|
| Q |
603 |
tcacttataaaaattaagttaagccggcatattaacatccagtccttgaattttgtagagaacaaaaataatatccgatttgctgatatcagtttcaaag |
702 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37524256 |
tcacttataaaaattaagttaagccggcatattaacatccagtccttgaattttgtagagaacaaaaataatatccgatttgctgatatcagtttcaaag |
37524355 |
T |
|
| Q |
703 |
gctgagagacaag |
715 |
Q |
| |
|
||||||||||||| |
|
|
| T |
37524356 |
gctgagagacaag |
37524368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 191 - 715
Target Start/End: Original strand, 37688273 - 37688801
Alignment:
| Q |
191 |
ttcttttgataccatttgctaattgaatttacagtgaactgtaaatatgcttttatgaattgtaaatacgtattaaaggtaatagaattgacggtgttga |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37688273 |
ttcttttgataccatttgctaattgaatttatagtgaactgtaaatatgcttttatgaattgtaaatacgtattaaaggtaatagaattgacggtgttga |
37688372 |
T |
|
| Q |
291 |
aattaatgtgatggttttctgttcttct---aatgtttgattttggaacatgtaggaactgaaggaattgaaagatcttgaggagcaaatgaaacctaag |
387 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37688373 |
aattaatgtaatggttttctgttcttcttctaatgtttgattttggcacatgtaggaactaaaggaattgaaagatcttgaggagcaaatgaaacctaag |
37688472 |
T |
|
| Q |
388 |
gtttgattattttcatcttttgattgtggttaaacttt-ccttccagattctctcaagacacaaaactcctattggtatacatgttatttaaaatataat |
486 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37688473 |
gtttgattattttcatcttttgattgtggttaaacttttccttcccgattctctcaagacacaaaactcctattggtatacatgttatttaaaatataat |
37688572 |
T |
|
| Q |
487 |
gaagtggtggattcaattgtgcatgcacacgaatcttctataacaaagatgaactagaaattttaaagaggttatcgctctcttactccaaaataagtta |
586 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
37688573 |
gaagtggtggattcaattgtgcatgcacacgaatcttctataacaaagatgaactagaaattttaaagaggttatcgttctcttactccaaaataagtta |
37688672 |
T |
|
| Q |
587 |
aggagcattgcacgtgtcacttataaaaattaagttaagccggcatattaacatccagtccttgaattttgtagagaacaaaaataatatccgatttgct |
686 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37688673 |
aggagcattgcacgtgtcacttataaaaattaagttaagccggtatattaacatccagtccttgaattttgtagagaacaaaaataatatccgatttgct |
37688772 |
T |
|
| Q |
687 |
gatatcagtttcaaaggctgagagacaag |
715 |
Q |
| |
|
|||||||||||||||| |||||||||||| |
|
|
| T |
37688773 |
gatatcagtttcaaagactgagagacaag |
37688801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 261 - 557
Target Start/End: Original strand, 37785417 - 37785716
Alignment:
| Q |
261 |
tattaaaggtaatagaattgacggtg-ttgaaattaatgtgatggttttctgttcttctaatgtttgattttggaacatgtaggaactgaaggaattgaa |
359 |
Q |
| |
|
|||||||||||||||| ||||| || ||||||||||||||||| |||||||||| |||||||||||| ||||| |||||||||||||||| |
|
|
| T |
37785417 |
tattaaaggtaatagatttgacagttcttgaaattaatgtgatgcttttctgttcgtctaatgtttgaatttggcacatgtaggaactgaa--------- |
37785507 |
T |
|
| Q |
360 |
agatcttgaggagcaaatgaaacctaaggtttgattattttcatcttttgattg-----------tggttaaactttccttccagattctctcaagacac |
448 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||| || ||||| || || ||||||||| |
|
|
| T |
37785508 |
agatcgtgaggagcaaatgaaacctaaggtttgattattttcagcttatgattggacaataattgtggttaaacatttcttcctgacactatcaagacac |
37785607 |
T |
|
| Q |
449 |
aaaactcctattggtatacatgttatttaaaatataatgaagtggtggattcaattgtgcatgcacacgaatcttctataacaaagatgaactagaaatt |
548 |
Q |
| |
|
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||| || |
|
|
| T |
37785608 |
gagactcctattggtatacatgttatttaaattataatgaagtggtggattcaattgtgcatgcgcatgaaacttctataacaaagatgaactagaagtt |
37785707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 267 - 606
Target Start/End: Original strand, 37616542 - 37616886
Alignment:
| Q |
267 |
aggtaatagaattgacggt-gttgaaattaatgtgatggttttctgttcttctaatgtttgattttggaacatgtaggaactgaaggaattgaaagatct |
365 |
Q |
| |
|
|||||||| ||||||| || |||||| |||| |||| |||| ||||| | |||| ||||||||||| ||||||||||||||||| || |||||||| |
|
|
| T |
37616542 |
aggtaataaaattgacagttgttgaagttaacatgattgtttcctgttactttaatatttgattttggcacatgtaggaactgaagcaactgaaagatac |
37616641 |
T |
|
| Q |
366 |
tgaggagcaaatgaaacctaaggtttgattatttt-catcttttgat-----------tgtggttaaactttccttccagattctctcaagacacaaaac |
453 |
Q |
| |
|
|| ||| ||||||||||||||||||||||||||| || ||||| || ||| | |||||||| ||||| |||||| ||| ||||||| || |
|
|
| T |
37616642 |
cgaagagaaaatgaaacctaaggtttgattatttttcagctttttatcgcacagcagttgttggtaaacttttcttcctgattctatcacgacacaagac |
37616741 |
T |
|
| Q |
454 |
tcctattggtatacatgttatttaaaatataatgaagtggtggattcaattgtgcatgcacacgaatcttctataacaaagatgaactagaaattttaaa |
553 |
Q |
| |
|
||||| | || ||||||||||||||||||||||||||| ||| ||||||| || || |||||||||||||||||||||||||||||| || |
|
|
| T |
37616742 |
tccta--------cgtggtatttaaaatataatgaagtggtggatgaaatcgtgcatgtgcatcaaacttctataacaaagatgaactagaaattttgaa |
37616833 |
T |
|
| Q |
554 |
gaggttatcgctctcttactccaaaataagttaaggagcattgcacgtgtcac |
606 |
Q |
| |
|
|||||||| | |||| |||||| ||||||||||||||||| || ||||||| |
|
|
| T |
37616834 |
gaggttattgttctcatactcctgtataagttaaggagcattccatgtgtcac |
37616886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 267 - 605
Target Start/End: Original strand, 37793148 - 37793492
Alignment:
| Q |
267 |
aggtaatagaattgacggt-gttgaaattaatgtgatggttttctgttcttctaatgtttgattttggaacatgt-aggaactgaaggaattgaaagatc |
364 |
Q |
| |
|
|||||||| ||||||| || |||||| |||| |||| |||| ||||| | |||| ||||||||||| |||||| ||||||||||| || |||||||| |
|
|
| T |
37793148 |
aggtaataaaattgacagttgttgaagttaacatgattgtttcctgttactttaatatttgattttggcacatgttaggaactgaagcaactgaaagata |
37793247 |
T |
|
| Q |
365 |
ttgaggagcaaatgaaacctaaggtttgattatttt-catcttttgat-----------tgtggttaaactttccttccagattctctcaagacacaaaa |
452 |
Q |
| |
|
|| ||| ||||||||||||||||||||||||||| || ||||| || ||| | |||||||| ||||| |||||| ||| ||||||| | |
|
|
| T |
37793248 |
ccgaagagaaaatgaaacctaaggtttgattatttttcagctttttatcgcacaggagttgttggtaaacttttcttcctgattctatcacgacacaaga |
37793347 |
T |
|
| Q |
453 |
ctcctattggtatacatgttatttaaaatataatgaagtggtggattcaattgtgcatgcacacgaatcttctataacaaagatgaactagaaattttaa |
552 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||||| ||| ||||||| || || |||||||||||||||||||||||||||||| | |
|
|
| T |
37793348 |
ctccta--------catggtatttaaaatataatgaagtggtggatgaaatcgtgcatgtgcatcaaacttctataacaaagatgaactagaaattttga |
37793439 |
T |
|
| Q |
553 |
agaggttatcgctctcttactccaaaataagttaaggagcattgcacgtgtca |
605 |
Q |
| |
|
||||||||| | |||| |||||| ||||||||||||||||| || |||||| |
|
|
| T |
37793440 |
agaggttattgttctcatactcctgtataagttaaggagcattccatgtgtca |
37793492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 647 - 712
Target Start/End: Original strand, 37785764 - 37785829
Alignment:
| Q |
647 |
cttgaattttgtagagaacaaaaataatatccgatttgctgatatcagtttcaaaggctgagagac |
712 |
Q |
| |
|
|||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
37785764 |
cttgtattttgcagagaacaaaaataatatctgatttgctgatatcagtttcaaaggctgagagac |
37785829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 189
Target Start/End: Original strand, 37785364 - 37785414
Alignment:
| Q |
139 |
cgacctgacaaaaatggcagtgaaacaactgaactgtgttattcaaactgc |
189 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
37785364 |
cgacctgacaaaaatggcagtgaaaaaaccaaactgtgttattcaaactgc |
37785414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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