View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18318_low_6 (Length: 667)
Name: NF18318_low_6
Description: NF18318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18318_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 608; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 608; E-Value: 0
Query Start/End: Original strand, 11 - 649
Target Start/End: Complemental strand, 1036224 - 1035588
Alignment:
| Q |
11 |
gagcacagacggagagagagatattgcagttgcttgatcatccatttcttccaactttgtatacacattttgagactgaccgtttctcttgtttggtgat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1036224 |
gagcacagacggagagagagatattgcagttgcttgatcatccatttcttccaactttgtatacacattttgagactgaccgtttctcttgtttggtgat |
1036125 |
T |
|
| Q |
111 |
ggaatattgtcctggtggtgacctacacactttaaggcagcggcaacccgggaaacatttctctgaatatgctgcacggtatgtgttttatatgatacat |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1036124 |
ggaatattgtcctggtggtgacctacacactttaaggcagcggcaacccgggaaacatttctctgaatatgctgcacggtatgtgttttatatgatacat |
1036025 |
T |
|
| Q |
211 |
agtgacattcctttgtctgatctttgttatttgcttccccctcatgaaaatctgctttgcattcactttgtcatatagagaatatatctcaatttttgtg |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1036024 |
agtgacattcctttgtctgatctttgttatttgcttccccctcatgaaaatctgctttgcattcactttgtcatatagagaatatttctcaatttttgtg |
1035925 |
T |
|
| Q |
311 |
tgtatgtgcatatgttgaagtgtcattgatgtaattatcttttccttttcataaagcgttatcgagaatagataaatcgtaatgtgtttttatttttctt |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
1035924 |
tgtatgtgcatatgttgaagtgtcattgatgtaattatcttttccttttcataaagcgttatcgagaatagataaatcgtaatgtgttttttttttcctt |
1035825 |
T |
|
| Q |
411 |
ctctcattttctgatcctttatctgttacatctggaaggcttttgggaaaattcatataatttcaaaagaaagaggaaattatggatttgtaaaaacttc |
510 |
Q |
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| T |
1035824 |
ctct--ttttctgatcctttatctgttacatctggaaggcttttgggaaaattcatataatttcaaaagaaagaggaagttatggatttgtaaaaacttc |
1035727 |
T |
|
| Q |
511 |
cccctgaatataattgaatggcaacacatggttggtaccaaggaaggaggagaaaatttgattctagatcaattgcttatatctataaaatctcccgatc |
610 |
Q |
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| T |
1035726 |
cccctgaatataattgaatggcaacacatggttggtaccaaggaaggaggagaaaatttgattctagatcaattgcttatatctataaaatctcccgatc |
1035627 |
T |
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| Q |
611 |
cttgttccctccaatgaaggttgtgcaatatactgtttg |
649 |
Q |
| |
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| T |
1035626 |
cttgttccctccaatgaaggttgtgcaatatattgtttg |
1035588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 11 - 194
Target Start/End: Complemental strand, 31316363 - 31316180
Alignment:
| Q |
11 |
gagcacagacggagagagagatattgcagttgcttgatcatccatttcttccaactttgtatacacattttgagactgaccgtttctcttgtttggtgat |
110 |
Q |
| |
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|||| ||||| || || ||||||||||||||||| || ||||||||||| || | ||||||||||||||||||| ||| | ||||| |||||||| || |
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| T |
31316363 |
gagcgcagacagaaagggagatattgcagttgctggaccatccatttctacctatgctgtatacacattttgagaccgacagattctcatgtttggtaat |
31316264 |
T |
|
| Q |
111 |
ggaatattgtcctggtggtgacctacacactttaaggcagcggcaacccgggaaacatttctctgaatatgctgcacggtatgt |
194 |
Q |
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||| || ||||| ||||| || ||||| |||||||||| || ||||| |||||||||||||| || ||||||||||||||||| |
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| T |
31316263 |
ggagtactgtcccggtggagatctacatgctttaaggcaacgacaaccagggaaacatttctcagagtatgctgcacggtatgt |
31316180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 128
Target Start/End: Complemental strand, 12235356 - 12235244
Alignment:
| Q |
16 |
cagacggagagagagatattgcagttgcttgatcatccatttcttccaactttgtatacacattttgagactgaccgtttctcttgtttggtgatggaat |
115 |
Q |
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||||| ||||||||||||||||||| || |||||||||||| | || | ||||| ||||| |||||||| || |||||||| ||||| ||||| | |
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| T |
12235356 |
cagaccgagagagagatattgcagtctctcgatcatccatttttaccttcattgtacacacactttgagacagaatcattctcttgcttggttatggagt |
12235257 |
T |
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| Q |
116 |
attgtcctggtgg |
128 |
Q |
| |
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|||||||||||| |
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| T |
12235256 |
tttgtcctggtgg |
12235244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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